Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25530 650 / 0 Transmembrane amino acid transporter family protein (.1) AT5G40780 507 / 1e-178 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 498 / 2e-175 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 487 / 7e-171 Transmembrane amino acid transporter family protein (.1) AT1G67640 481 / 1e-168 Transmembrane amino acid transporter family protein (.1) AT1G61270 434 / 7e-150 Transmembrane amino acid transporter family protein (.1) AT1G71680 422 / 2e-145 Transmembrane amino acid transporter family protein (.1) AT3G01760 409 / 5e-140 Transmembrane amino acid transporter family protein (.1) AT1G47670 278 / 2e-88 Transmembrane amino acid transporter family protein (.1) AT4G35180 184 / 8e-53 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034283 [exp] 657 / 0 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 505 / 5e-178 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 505 / 5e-178 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 495 / 1e-173 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 485 / 4e-170 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 434 / 3e-150 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10008263 [exp] 434 / 7e-149 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032074 [exp] 385 / 2e-131 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032073 [exp] 294 / 4e-96 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128300 [exp] 690 / 0 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 680 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 515 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 497 / 7e-175 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 491 / 2e-172 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 485 / 4e-170 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 466 / 1e-162 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.014G036500 [exp] 288 / 3e-92 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 252 / 3e-78 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 244 / 5e-75 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10041482 pacid=23147064 polypeptide=Lus10041482 locus=Lus10041482.g ID=Lus10041482.BGIv1.0 annot-version=v1.0 ATGGTATCATCAGATTCTGCTCCTCCTCCATCTAAGCAGCCAGAGAATAACCAGTCGACGACGACGATGACCAAGAAATGGACAGAGGAAGAAGGAGTGG ATCCGGACCGGCGAGCCAAATGGTGGTACTCAACTTTCCACTCCGTCACTGCAATGATTGGTGCCGGTGTCCTCGGCCTCCCCTCTGCCATGGCTTACTT GGGATGGGGTCCAGGGGCAATGATGCTAGTGGTATCATGGTGCCTGACCCTGAACACAATGTGGCAGATGATCCAGCTCCATGAATGCGTCGAGGGGACT CGATTTGACCGGTACATAGACCTGGGAAGGCATGCCTTTGGGAAGAAGCTAGGACCCTGGATCGTTCTCCCTCAGCAGCTGATAGTGCAGGTTGGGTGTA ACATAGTGTACATGGTGACTGGTGGGCAGTGTTTGAAGAAGTTTATGCAGATTGCTTGTTCCAGCTGCACCCCTCTCAAACAGTCTTATTGGATTCTCAT CTTTGGTGGCATTCACTTCTTCCTCTCTCAGCTCCCCAACTTCAACTCCGTCGCCGGGGTCTCTCTTGCTGCCGCCGTCATGTCTCTCTGCTACTCAACA ATTGCATGGGTGGGTTGCTTGAGCCACGGAAGGGGGCCTGATGTGAGCTACGAGTACAAGAAATCAAGCCCAGCAGACTCTGTGTTCAGAGTGTTCAACG CGCTGGGTTCAATCTCCTTCGCGTTTGCAGGGCACGCGGTGGCGTTGGAGATACAGGCCACCATCCCTTCAACCCCGGAGAAGCCTTCCAGGATTCCTAT GTGGAAAGGTGCTCTGGGTGCTTATTTTGTGAACGCCGTTTGCTATTTCCCGGTGGCCTTCATAGGCTACTGGGCTTTCGGGAAAGACGTCAATGACAAC GTGCTTATCGACCTCCGTAGGCCCGCTTGGCTCATTGCCTCTGCAAACCTCATGGTTGTCGTCCACGTCATCGGCAGCTACCAGGTGTATGCGATGCCAG TTTTTGGCTTGCTGGAAGGGACGATGACGAAAAAGTTCAACGTTCCTCCTGGGTTGCTTCTTAGACTTTTGGTCCGATCGGCTTATGTTGCGTTTACTCT GTTCATCGGAGTGACATTCCCATTCTTCGGGGATCTTCTGGGATTCTTTGGCGGATTCGGATTTGCTCCAACTTCCTATTTCCTGCCAAGTATAATGTGG CTGATAATCAAGAAGCCTCAAAGATTCAGCCCCAAATGGTTTATTAACTGGGCTTCGATCGTGATAGGGGTGTTTATTATGTTGGCGTCTACTATCGGTG GGTTTCGCAACATTATCACTGATGCCAACACCTACACCTTCTACACATGA
AA sequence Show only first row Show all	>Lus10041482 pacid=23147064 polypeptide=Lus10041482 locus=Lus10041482.g ID=Lus10041482.BGIv1.0 annot-version=v1.0 MVSSDSAPPPSKQPENNQSTTTMTKKWTEEEGVDPDRRAKWWYSTFHSVTAMIGAGVLGLPSAMAYLGWGPGAMMLVVSWCLTLNTMWQMIQLHECVEGT RFDRYIDLGRHAFGKKLGPWIVLPQQLIVQVGCNIVYMVTGGQCLKKFMQIACSSCTPLKQSYWILIFGGIHFFLSQLPNFNSVAGVSLAAAVMSLCYST IAWVGCLSHGRGPDVSYEYKKSSPADSVFRVFNALGSISFAFAGHAVALEIQATIPSTPEKPSRIPMWKGALGAYFVNAVCYFPVAFIGYWAFGKDVNDN VLIDLRRPAWLIASANLMVVVHVIGSYQVYAMPVFGLLEGTMTKKFNVPPGLLLRLLVRSAYVAFTLFIGVTFPFFGDLLGFFGGFGFAPTSYFLPSIMW LIIKKPQRFSPKWFINWASIVIGVFIMLASTIGGFRNIITDANTYTFYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	0	1
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	1.4	0.9751
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	2.0	0.9731
AT2G21180			unknown protein		Lus10012173 [exp]	2.4	0.9606
AT5G42710			unknown protein		Lus10010807 [exp]	2.8	0.9659
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	3.9	0.9654
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	6.7	0.9676
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	8.0	0.9450
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	9.4	0.9552
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10036842 [exp]	10.3	0.9053
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	12.4	0.9349

Compare expression of checked genes

Lus10041482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.