Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68670 163 / 3e-46 GARP myb-like transcription factor family protein (.1) AT1G25550 153 / 1e-42 GARP myb-like transcription factor family protein (.1) AT1G13300 145 / 1e-39 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT2G03500 144 / 1e-38 GARP Homeodomain-like superfamily protein (.1) AT3G25790 140 / 1e-37 GARP myb-like transcription factor family protein (.1) AT1G49560 113 / 6e-28 GARP Homeodomain-like superfamily protein (.1) AT4G37180 96 / 1e-21 GARP Homeodomain-like superfamily protein (.1.2) AT5G05090 69 / 5e-13 GARP Homeodomain-like superfamily protein (.1) AT4G28610 70 / 7e-13 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G59570 69 / 7e-13 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034280 [exp] 271 / 4e-88 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10021699 [exp] 176 / 6e-51 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 175 / 1e-50 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10043304 [exp] 145 / 1e-38 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10012056 [exp] 129 / 2e-33 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 129 / 3e-33 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 116 / 9e-29 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10019639 [exp] 102 / 2e-24 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10009334 [exp] 101 / 8e-24 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128900 [exp] 197 / 1e-58 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.008G117500 [exp] 195 / 3e-58 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 135 / 5e-35 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 130 / 1e-33 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 124 / 2e-31 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 124 / 5e-31 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 112 / 1e-27 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 109 / 2e-26 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.008G142000 [exp] 68 / 1e-12 AT1G14600 130 / 2e-36 Homeodomain-like superfamily protein (.1) Potri.018G151400 [exp] 69 / 2e-12 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041485 pacid=23146974 polypeptide=Lus10041485 locus=Lus10041485.g ID=Lus10041485.BGIv1.0 annot-version=v1.0 ATGGATTTCCCCGATCAGAGGAAGCGCTGCCACCAGTATGTCGACGCCTTGGAAGAGGAGCGCCGGAAAATTAAGGTTTTCCAACGTGAACTTCCTCTTT GTTTCGAGCTCGTCACCCAAGCGATCGATGCCTGCAGGAAGGAGTTGTCCGGAACGACGACTGAGTACAACATGCCTGGTCAATCCGACTGCTCCGAGCA TACCTCCAGTGGAGGTCCTGTCCTTGAAGAATTCATCCCTATCAAGCCCCATGACGACGATGATCAAGAAAACAACAACAGTGACCACCACGACGAGGAA GACGATGATTATCATTTTCAAAAGGAGAGATCATCACTGAAAAGGACTAGAGACGACGATAAGGCGGATGAAGAGGATATCAATAAGGAGAAGATGAATG ACCATAAGAAGAAATCCGAGTGGCTCAGATCTGTTCAATTGTGGAACCAATCTCCAGATCCACCTTCCGTTAGAGAAGTACTGGGGGATGTACCGAGAAA AGCGGCGGTGAAGGAAGTGAAGAGAAGCAACGGAGGAGGGGGAGGAGGCGCATTTCAGCCTTTCCAAAAAGAGAAAAGCAGTTGCGTTGGGAAGAGCAAC TCAGCTAATCATGACAAAGTTGCGGTGGTTGCTAAACCAGCTGCTGCAGCTCCGCCTTCGGCTGTTGCGATGAGTTCAAACGCTGAAACAGCTGCTGCTG CTACTGCCGGCGTGGCAGCTGGTGCGGGGACCAGCGGCGGAGGCAGTACTAGCATTAGCAATAATAATAACAGCAACAGCAATAAAACAAAAGATCATCA TATGGATAAAGAAGGGCAGGCGCAGAGAAAGCAAAGGCGGTGTTGGACTCCAGAGTTTCACCGAAGATTCCTTCACGCTCTCCAACAGCTCGGCGGTTCA CATGCTGCAACTCCGAAGCAAATTAGGGAGTTAATGAAGGTAGATGGGTTGAGTAATGATGAAGTCAAGAGCCATTTGCAGAAATACCGCCTGCATACGC GGAGGCCGAGCCACGCTATCCAAAACAACAGCCACCAGCAAGGCCCACAGTTTGTAGTCGTGGGTGGGATATGGGTGCCACCGCCGGCTGAATATGCTGC AACAGCTCCTGGTGGAATGTATGCGCCTATAGCACCTGCTATTGTCGTGACAGATAAAAAACAGCAGACTAGAAGTTCGGAAAGAGGAGGCGGCAGCAGC AGCCACAGTGATGGAGGAGGAGCTCATTCTTGTTCTCCGACCACGTCGTCCTCCACCCATACCGCCACAAGCCCGCCGGCGATCTAA
AA sequence Show only first row Show all	>Lus10041485 pacid=23146974 polypeptide=Lus10041485 locus=Lus10041485.g ID=Lus10041485.BGIv1.0 annot-version=v1.0 MDFPDQRKRCHQYVDALEEERRKIKVFQRELPLCFELVTQAIDACRKELSGTTTEYNMPGQSDCSEHTSSGGPVLEEFIPIKPHDDDDQENNNSDHHDEE DDDYHFQKERSSLKRTRDDDKADEEDINKEKMNDHKKKSEWLRSVQLWNQSPDPPSVREVLGDVPRKAAVKEVKRSNGGGGGGAFQPFQKEKSSCVGKSN SANHDKVAVVAKPAAAAPPSAVAMSSNAETAAAATAGVAAGAGTSGGGSTSISNNNNSNSNKTKDHHMDKEGQAQRKQRRCWTPEFHRRFLHALQQLGGS HAATPKQIRELMKVDGLSNDEVKSHLQKYRLHTRRPSHAIQNNSHQQGPQFVVVGGIWVPPPAEYAATAPGGMYAPIAPAIVVTDKKQQTRSSERGGGSS SHSDGGGAHSCSPTTSSSTHTATSPPAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	0	1
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	4.2	0.7839
AT3G54880			unknown protein		Lus10038690 [exp]	9.2	0.7163
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	12.4	0.7849
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	14.2	0.7631
AT3G11760			unknown protein		Lus10021254 [exp]	18.8	0.7817
AT2G30630			P-loop containing nucleoside t...		Lus10041167 [exp]	19.0	0.7763
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	21.4	0.7766
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	25.5	0.6917
AT5G03230			Protein of unknown function, D...		Lus10026507 [exp]	30.8	0.7528
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	33.3	0.7536

Compare expression of checked genes

Lus10041485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.