Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68840 397 / 3e-138 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G13260 388 / 8e-135 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G25560 387 / 3e-134 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT3G25730 345 / 5e-118 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G50680 168 / 4e-49 AP2_ERF AP2/B3 transcription factor family protein (.1) AT3G11580 162 / 6e-48 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT3G61970 161 / 6e-47 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 160 / 2e-46 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G01030 160 / 1e-45 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT1G51120 158 / 4e-45 AP2_ERF AP2/B3 transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021707 [exp] 380 / 3e-131 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 370 / 1e-129 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10036282 [exp] 160 / 5e-46 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10021326 [exp] 152 / 3e-43 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 140 / 5e-38 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10026212 [exp] 112 / 4e-29 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10025226 [exp] 71 / 4e-13 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 70 / 9e-13 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10003037 [exp] 67 / 1e-12 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129200 [exp] 430 / 2e-150 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 424 / 1e-148 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 185 / 2e-55 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 185 / 2e-55 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 171 / 1e-49 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.014G107200 [exp] 167 / 8e-48 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 164 / 1e-46 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 164 / 3e-46 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 163 / 3e-46 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.006G208100 [exp] 152 / 8e-43 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10041487 pacid=23146856 polypeptide=Lus10041487 locus=Lus10041487.g ID=Lus10041487.BGIv1.0 annot-version=v1.0 ATGGACGGAATCAGCTCTTCTTCCGCCGACGAAAGCACCACCACCACCACTGGCGAATCAATCTCTCCACTTCCAACTCCTCCTCCGGCCGCCAAGGAAT CCCTCTGCCGGGTTGGAAGCGGAGCGAGCAGCGTGGTCCTGGACTCTGACTTATCCGGGATCGAAGCAGAGTCACGCAAACTGCCTTCCTCCAAATACAA AGGAGTGGTCCCACAGCCAAACGGCCGTTGGGGAGCCCAGATTTACGAGAAGCACCAACGCGTCTGGCTCGGCACTTTTAACGAGGAAGACGAAGCCGCC CGCTCCTACGACATCGCCGCCCTCCGCTTCCGCGGCCGCGACGCCGTCACCAATTTCAAGAAACCCTCCCTCTCCGACGCATCCTCCGACGACGAATCGG AATCCGAATCGGAGTTCCTCAACTCCCACTCCAAGGCTGAGATCGTCGATATGCTGAGGAAGCACACTTACAACGACGAGCTCCAGCAGAGCCGCCGCCG CCACCACCACCACAACCGTGGGAAACAGAGCAGCACACTCGATTCCTCTGACAATATTGCTGCCCGGGGAGCCAGGGAGCAGCTGTTCGAGAAGGCGGTG ACTCCGAGCGACGTCGGGAAATTGAACCGACTAGTGATCCCCAAACAGCACGCGGAGAAGCATTTCCCCCTCCAGACCGGCGGCGCCGCCGCCGGAGTTA GCAGCAGCACGAAAGGTGTGCTGCTGAATTTTGAGGACGCCGGAGGGAAGGTTTGGAGGTTCCGGTACTCGTACTGGAACAGTAGCCAGAGCTACGTGCT GACTAAAGGATGGAGCCGGTTTGTGAAGGAGAAGAATCTGAAAGCCGGAGATACTGTGGGCTTCCAGAGATCCGTGACAGGGCAGGATCAGAAGCAGCTA TACATTAACTGGAAGGCCAGGAGTGGTGAAGGAGTAGAGTCGAACCGTTTGGTTTGCAGGGTCCAACCGGTACAGATGGTTCGGTTATTTGGGGTGAATA TATGTAAACCGGTGGACGGTGGGTGTAATGGGAAGAGATCGATGGAGGAGATGGTGGGATTTCACTGCAGTAAAAAGCAAAGGGTAATTGGAGCCTTGTA G
AA sequence Show only first row Show all	>Lus10041487 pacid=23146856 polypeptide=Lus10041487 locus=Lus10041487.g ID=Lus10041487.BGIv1.0 annot-version=v1.0 MDGISSSSADESTTTTTGESISPLPTPPPAAKESLCRVGSGASSVVLDSDLSGIEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAA RSYDIAALRFRGRDAVTNFKKPSLSDASSDDESESESEFLNSHSKAEIVDMLRKHTYNDELQQSRRRHHHHNRGKQSSTLDSSDNIAARGAREQLFEKAV TPSDVGKLNRLVIPKQHAEKHFPLQTGGAAAGVSSSTKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVGFQRSVTGQDQKQL YINWKARSGEGVESNRLVCRVQPVQMVRLFGVNICKPVDGGCNGKRSMEEMVGFHCSKKQRVIGAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10041487 [exp]	0	1
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Lus10034276 [exp]	1.4	0.7911
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	2.0	0.8022
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10027938 [exp]	6.0	0.7491
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	8.5	0.7560
					Lus10003592 [exp]	12.5	0.7343
					Lus10018551 [exp]	17.1	0.7224
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	17.9	0.7364
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10025212 [exp]	20.8	0.5808
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	22.1	0.7185
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	24.7	0.6196

Compare expression of checked genes

Lus10041487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.