Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 346 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 313 / 8e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 244 / 4e-79 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 211 / 2e-66 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 208 / 8e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 208 / 1e-65 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 202 / 4e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 197 / 2e-61 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 183 / 1e-55 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012575 [exp] 517 / 0 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 239 / 1e-77 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 239 / 3e-77 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 237 / 1e-76 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 234 / 4e-75 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 233 / 2e-74 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 230 / 4e-74 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 229 / 9e-74 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 227 / 4e-72 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236700 [exp] 428 / 2e-151 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G145800 [exp] 427 / 5e-151 AT3G26760 348 / 8e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G135510 [exp] 343 / 4e-118 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 266 / 1e-87 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 265 / 3e-87 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 263 / 3e-86 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 246 / 3e-80 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 241 / 2e-78 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 241 / 4e-78 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 239 / 1e-77 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041518 pacid=23146641 polypeptide=Lus10041518 locus=Lus10041518.g ID=Lus10041518.BGIv1.0 annot-version=v1.0 ATGATCAAATCCATCAACGACGCCGTCTACTCCAAACCCACGTTCTTCTCCGACGAATCCGACGATTCGCTAGACTCCGTCCTCGCTCCGCCACTAACGC AGCAGAGGAAAAAGAGTCGGTTAGTCGGAAGCAAGAAAATCAAAGGAAGCAAGAGCTTGACTTCGTTGGAATTCGAGGAGTTGAAAGTGTTTATGGATTT GGGTTTTGTCTTCTTCGAGAAGGATAAGGATTACCTGAAGCTGGTTTCGCTGGAAGGTAAAATTGCCCTAATAACGGGTGCTGCAAGTGGGCTGGGTAAG GCCACTGCCCATGAGTTCATCCGACACGGAGCTCAAGTCATCATTGCCGACGTAGATTCACAACTTGGCTCCCAAGTTACCCAAGAATTGGGTCCAGAAG CTCATTTCGTCCAATGTGATGTCACTGTTGAAGCTCAAGTGAAAGAAGCAGTGGACTTGGCCATCTCTCACTATGGCAAGCTAGACATAATGTACAACAA TGCGGGAATCACAGGTCCAGTCTTTCCTTACAGTATCGCCGATATCGACTTGGAGGAATTCGACAAGGTGATGCTGGTCAACGTTCGAGCCATCATCGCG GGAATCAAGCACGCATCCCGAGTAATGATTCCTGCAGGAACAGGTTCGATCCTGTGCACTTCCAGTATTAGCGGGTTGATGGGTGGTCTTGGACCGCATC CATATTCCATCTCCAAGTCCGCGATACATGGCGTTGTTAAGTCTGTGGCAAGTGAGCTTTGCAGGGCTGGTGTACGAATCAACTGCATATCGCCAGGTCC TATCCCGACACCAATGTCGTTGGGCCAAATTGGGATGTTGTACCCGGGAGCAAGCAAGGAGCAAATAGTGGAGGTGGTGAAAGGACTAGGAGATCTCAAG GGTGCAGTTTGCGAAGAAGTGGACGTAGCCAAAGCAGCGTTATACTTGGCCTCGGATGAAGCCAAGTACATAACTGGGCATAACCTTGTTGTTGATGGAG GCTTTACCTCTTTCAAAAACCTTCCACTTCCTTCTCTCCATGAGGTTCTGTAA
AA sequence Show only first row Show all	>Lus10041518 pacid=23146641 polypeptide=Lus10041518 locus=Lus10041518.g ID=Lus10041518.BGIv1.0 annot-version=v1.0 MIKSINDAVYSKPTFFSDESDDSLDSVLAPPLTQQRKKSRLVGSKKIKGSKSLTSLEFEELKVFMDLGFVFFEKDKDYLKLVSLEGKIALITGAASGLGK ATAHEFIRHGAQVIIADVDSQLGSQVTQELGPEAHFVQCDVTVEAQVKEAVDLAISHYGKLDIMYNNAGITGPVFPYSIADIDLEEFDKVMLVNVRAIIA GIKHASRVMIPAGTGSILCTSSISGLMGGLGPHPYSISKSAIHGVVKSVASELCRAGVRINCISPGPIPTPMSLGQIGMLYPGASKEQIVEVVKGLGDLK GAVCEEVDVAKAALYLASDEAKYITGHNLVVDGGFTSFKNLPLPSLHEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10041518 [exp]	0	1
AT1G21550			Calcium-binding EF-hand family...		Lus10042761 [exp]	4.7	0.7122
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10025790 [exp]	7.1	0.6961
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	7.6	0.7404
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	15.9	0.6625
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10006328 [exp]	17.3	0.6736
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	23.2	0.6737
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10019622 [exp]	29.6	0.6604
AT5G64460			Phosphoglycerate mutase family...		Lus10020467 [exp]	30.7	0.6626
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	31.1	0.6919
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	44.0	0.6474

Compare expression of checked genes

Lus10041518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.