Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 309 / 4e-97 GRAS RGL1 RGA-like 1 (.1) AT3G03450 296 / 6e-92 GRAS RGL2 RGA-like 2 (.1) AT3G54220 299 / 8e-92 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G14920 292 / 2e-90 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 286 / 2e-88 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G41920 277 / 2e-86 GRAS GRAS family transcription factor (.1) AT2G01570 283 / 3e-86 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G48150 262 / 1e-79 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 258 / 6e-79 GRAS SCL21 SCARECROW-like 21 (.1) AT1G63100 238 / 6e-69 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012554 [exp] 836 / 0 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10037055 [exp] 301 / 3e-94 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 300 / 1e-93 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10033583 [exp] 296 / 2e-91 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10040734 [exp] 298 / 6e-91 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 296 / 3e-90 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10017626 [exp] 291 / 1e-89 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 290 / 3e-89 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017930 [exp] 276 / 2e-84 AT1G66350 241 / 2e-73 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326000 [exp] 843 / 0 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 318 / 2e-99 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 315 / 1e-98 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 314 / 6e-98 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G091200 [exp] 306 / 3e-96 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.004G089800 [exp] 305 / 1e-94 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.016G143833 [exp] 310 / 2e-94 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.012G093900 [exp] 302 / 2e-94 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.006G114200 [exp] 302 / 4e-91 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G095100 [exp] 289 / 2e-89 AT1G66350 252 / 3e-77 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10041540 pacid=23146836 polypeptide=Lus10041540 locus=Lus10041540.g ID=Lus10041540.BGIv1.0 annot-version=v1.0 ATGCATCATCAACCAACTTCCCCTAATGATTCTTCAGTCTCCGAGTCTATGAAAGCAACCATGTCTTCTTCTGACATGGATCAACAACAACAGCAACAAC AAACTATCCTAACACCACCCAGCCTTAATTTCCATCCTGCAGTCAAGTTCGAGGTGGACGGAGATGTCGAAATCCAGTCCCCGGATAGCTCCATCTGGGA CAGCTTCTTCTCCGACCACGTCGCAGAAGGTGACTTCATGATCTCTTCCCCTGTCCGGAACGCCACCAACTTGTTCCCTTCACCATCAAGCTTCAGTTAC AGCACCTATGTCCAATCAATGCAAGGCCAGAGCAGTAGTATTACCGGCTGTTCGCCAACTCGCCATCTTTCTTCCCAGCTCGGTAGTTTCAGCAGTACCA CTTCCCTCAAGGGGAAAGGCCAGAGTCCTCTTCACAGGATGTTCAACTCTCCTAACAATAACAACCATTTCATGCAGCTCGAGAGCCTTACCGGGATCGA TGATTTCTTAGACGATTACAAGGATCATGGTGGTGGCAATACTAGTTCTGATACTAGTAAGATCATGTCATCATCCAGTAGTAATAATGGTGGACCTACC ACGGCTCAGCTTTTCGATCTCTCCATCCCTGTATCGTCCATGATGGATTGCTTGACGATGCCTAATCCTCCTTCAAGGTTCTGCGAATCAACTAGTAATT CGTGTGGGACGACCACGACTCATCAGCTGGTTGAAGAACGGGAGATGTTTCCTATGGGGCCGCTTGCGAGCCTTTCTGATCGGTTGCAAGAAGAGAGAGA TCAGGAGAAGCAAGTGCAAAAACTACAACTACATCATGCTGCGCCATCGGCTGAGACTACGACAACAGCTCAACAACCGTTGGAACACGCTCAGCAGGCG GGTCTTTCTGGCCATGGTGGCTTGATGGTTCCTCTTCCTGTCGAATCCGAGCAGGAACAATCAGACAGTGGGCTGCAACTAGTACACTTGCTTCTGGCAT GTGCAGAAGCGGTGGCGAAAGAGGACTACATGCTAGCAAGAAAATATCTCCACCACCTAAACAGAGTGGTTTCTCCTCTCGGCGACTCCATGCAAAGAGT TGCCGCCTGCTTCACCGAAGCACTTAGCGCCAGGCTGGCAGCCACGCTGGCCACAAAGCCAACCACCTCCGCTCCAAGACCCTTCACCCCATTCCCTTCC AACTCCATGGAAATCCTCAAAATCTACCAAATCCTCTACCAGGCTTGCCCCTACATCAAGTTTGCCCACTTCACCGCCAACCAAGCTATCTTCGAGGCCT TCGAGGCTGAGGAACGTGTCCACGTCATCGACCTCGACATCCTCCAGGGCTACCAGTGGCCTGCTTTCATGCAGGCATTGGCAGCCCGACCGGGGGGCGC TCCGTTCCTTCGAATTACAGGAGTCGGATCGTCCCCTGAATGTGTTAGGGAGACAGGCCGGTGTCTAACCGAGTTGGCTCACTCCCTCTACGTCCCATTC GAGTACCACGCCGTGGCTGAAGAGCTCGAGGACCTCAAACCGCACATGTTCAACCGAAGGGTGGGCGAGGCTCTGGCCGTCAACTCGGTCAACCGGCTCC ACCGCGTCCCTGGGAGATCCATCGGTCCACTTCTGGGCATGATCCGAGACCAGGCCCCGAACATTGTGACGTTAGTGGAGCAGGAAGCGAGCCACAACGG ACCTTACTTTCTGGGGAGGTTCCTCGAGGCGTTGCACTACTACTCAGCGATTTTCGACTCGTTGGACGCTACGTTCCCGCCGGATTCGGCCCAGAGGGCG AAGGTGGAACAGTACATATTCGCGCCGGAGATAAAGAACATAGTGGCGTGCGAAGGGGTGGAGAGGACGGAGAGGCACGAGAGGCTGGAGAAGTGGAGGA AGGTGATGGAAGGGAAAGGGTTCAAAGGAGTGGCACTGAGTGGGAACGCGGTGACTCAGTCGAAGATACTGTTGGGTTTGTACTCTTGCGATGGTTATAG GTTGACGGAGGATAACGGTTGCTTGCTTTTGGGGTGGCAGGATAGAGCCATCCTTGCTGCATCTGCATGGCGATGCTGA
AA sequence Show only first row Show all	>Lus10041540 pacid=23146836 polypeptide=Lus10041540 locus=Lus10041540.g ID=Lus10041540.BGIv1.0 annot-version=v1.0 MHHQPTSPNDSSVSESMKATMSSSDMDQQQQQQQTILTPPSLNFHPAVKFEVDGDVEIQSPDSSIWDSFFSDHVAEGDFMISSPVRNATNLFPSPSSFSY STYVQSMQGQSSSITGCSPTRHLSSQLGSFSSTTSLKGKGQSPLHRMFNSPNNNNHFMQLESLTGIDDFLDDYKDHGGGNTSSDTSKIMSSSSSNNGGPT TAQLFDLSIPVSSMMDCLTMPNPPSRFCESTSNSCGTTTTHQLVEEREMFPMGPLASLSDRLQEERDQEKQVQKLQLHHAAPSAETTTTAQQPLEHAQQA GLSGHGGLMVPLPVESEQEQSDSGLQLVHLLLACAEAVAKEDYMLARKYLHHLNRVVSPLGDSMQRVAACFTEALSARLAATLATKPTTSAPRPFTPFPS NSMEILKIYQILYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGSSPECVRETGRCLTELAHSLYVPF EYHAVAEELEDLKPHMFNRRVGEALAVNSVNRLHRVPGRSIGPLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRA KVEQYIFAPEIKNIVACEGVERTERHERLEKWRKVMEGKGFKGVALSGNAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRAILAASAWRC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041540 [exp]	0	1
AT3G07820			Pectin lyase-like superfamily ...		Lus10013783 [exp]	16.7	0.5445
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	35.2	0.5970
AT3G10350			P-loop containing nucleoside t...		Lus10021449 [exp]	87.7	0.5516
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	89.6	0.5582
AT5G07900			Mitochondrial transcription te...		Lus10016553 [exp]	115.1	0.5284
AT3G09430			unknown protein		Lus10023771 [exp]	126.2	0.5231
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	132.2	0.5431
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010040 [exp]	151.8	0.5331
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	251.6	0.5082

Compare expression of checked genes

Lus10041540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.