Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01980 327 / 1e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 110 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 110 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G55290 108 / 9e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 106 / 6e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46170 104 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 102 / 8e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 67 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 67 / 8e-13 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 64 / 1e-11 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012548 [exp] 487 / 8e-177 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10007038 [exp] 113 / 1e-29 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006699 [exp] 112 / 3e-29 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007039 [exp] 104 / 4e-26 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 96 / 6e-23 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014227 [exp] 74 / 4e-15 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018323 [exp] 74 / 6e-15 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 71 / 7e-14 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10031170 [exp] 70 / 1e-13 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067332 [exp] 384 / 4e-136 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.001G327800 [exp] 377 / 5e-133 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.016G035200 [exp] 100 / 8e-25 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G125900 [exp] 69 / 2e-13 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.004G200100 [exp] 69 / 2e-13 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 66 / 3e-12 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 65 / 3e-12 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 64 / 7e-12 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 64 / 8e-12 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 64 / 9e-12 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041545 pacid=23146997 polypeptide=Lus10041545 locus=Lus10041545.g ID=Lus10041545.BGIv1.0 annot-version=v1.0 ATGGCAAGTCCGACGAAGAAAGTGCTGTTGACCTCTAACGGAGACGAGGTTTCCCAGAGTATTGCCTTCCAGTTAGCCAAAAATGGTTGCAGGTTGGTTT TGATGGGGGATGAGGGCTCCCTAAGGCGTGTAAGTGATAAGATAATGAGTACTCTCAAAGGTGCGGCGACCATTGAAGTGGTAGGGATGGATATGGAAGA GGAAAAAGAGCATGTCTTTGAAGAAGCAGTGGAGAAGGCAACTAAGATTCTGGGCAACTTGGATGCTTTTGTTCATTGCTATTTCTATGAAGGAAAGATG CAAAACCTTCTACAGTTCCCAGAGAGTGAGTTCAAGAAGACTGTCAAGATCAACTTCATGGCTCCATGGTATTTGCTCAAGGCTGCTGGGAGTAGAATGT GTGACCATGGCACCGGAGGTTCAGTCGTATTTGTGACATCGCTAATTGGTGCAGAGAGGGGGATTTATCCGGGAGCTGCAGCATATGGCTCTTGTTCTGC TGGAATCCAGCAATTAGTTAGAAATTCGGCTATGGATATAGGGAAGTACAAGATCCGGGTGAACGCAATTGCAAGAGGGCTGCATGTCGAAGACGAGTTC CCCAAGTCAGTGGGGAAGGAGAGAGCAGAGAAGCTAGTTAAAGATGTAGTCCCTCTCCAGAGATGGTTAGATGTGAAGAATGATGTAGCATCCACTGTCA TCTATTTAATCAGCGACGGTTCGCGCTACATGACTGGAACCACCACATTCGTCGATGGTGGCCAGTCCTTGTCAAGACCCCGCCTCAGATCTTTCATGTA G
AA sequence Show only first row Show all	>Lus10041545 pacid=23146997 polypeptide=Lus10041545 locus=Lus10041545.g ID=Lus10041545.BGIv1.0 annot-version=v1.0 MASPTKKVLLTSNGDEVSQSIAFQLAKNGCRLVLMGDEGSLRRVSDKIMSTLKGAATIEVVGMDMEEEKEHVFEEAVEKATKILGNLDAFVHCYFYEGKM QNLLQFPESEFKKTVKINFMAPWYLLKAAGSRMCDHGTGGSVVFVTSLIGAERGIYPGAAAYGSCSAGIQQLVRNSAMDIGKYKIRVNAIARGLHVEDEF PKSVGKERAEKLVKDVVPLQRWLDVKNDVASTVIYLISDGSRYMTGTTTFVDGGQSLSRPRLRSFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	0	1
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	2.4	0.9300
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	2.6	0.9457
AT1G75510			Transcription initiation facto...		Lus10033190 [exp]	4.7	0.9059
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	5.5	0.9077
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10001059 [exp]	6.5	0.9103
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	6.7	0.9020
					Lus10025502 [exp]	7.2	0.9242
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	7.9	0.9275
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	8.4	0.8882
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Lus10028629 [exp]	8.9	0.9000

Compare expression of checked genes

Lus10041545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.