Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27120 607 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 255 / 9e-77 AAA-type ATPase family protein (.1.2) AT1G80350 213 / 1e-60 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 206 / 1e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G27600 198 / 2e-56 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G19740 204 / 3e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 196 / 4e-52 AAA-type ATPase family protein (.1.2) AT4G28000 192 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 192 / 5e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G02480 190 / 3e-50 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012530 [exp] 788 / 0 AT3G27120 582 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038001 [exp] 258 / 3e-78 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 255 / 7e-77 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10038499 [exp] 212 / 2e-61 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011477 [exp] 214 / 4e-61 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 214 / 5e-61 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019537 [exp] 203 / 4e-58 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 201 / 3e-57 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10023310 [exp] 197 / 3e-54 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331200 [exp] 855 / 0 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G331300 [exp] 375 / 5e-124 AT3G27120 400 / 2e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G071900 [exp] 260 / 1e-78 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G057800 [exp] 220 / 2e-63 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G176900 [exp] 218 / 2e-62 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G065100 [exp] 210 / 5e-61 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G184500 [exp] 208 / 5e-60 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 206 / 5e-59 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 202 / 1e-57 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 201 / 4e-57 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF09336 [flax] [poplar] Vps4_C Vps4 C terminal oligomerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10041563 pacid=23146926 polypeptide=Lus10041563 locus=Lus10041563.g ID=Lus10041563.BGIv1.0 annot-version=v1.0 ATGGACGCGGAAATAGCGAACGCGAGCGATGCTTCCCCAAGTTGGAGGAAGCAAGTCGACGATAACCTCAACCGGCTCCATTCCCTCAAATTCGGCGCCG ATAAGGTGCTGGAGAAGGGCGATTTCTCCACTTCCTACGTGTTAGGGCTTCGCCTCATTGGCTTCCTCGACTCGCATTCTCTCTCTGACGCCGACGAAGC TCTCACCCGCCCTATCCGTCGCGAAGCTCTCTCCAAGCTCGATTCCGCGCGTCGTGCTCTAGTTCCTGATTCTGACAGACGAGCGTTTGAACGAGCTGGG AGAGATCCTGGACCAGTGTTTGGCAGCAAAATTGATATTGACGCTGAGAAGATTAAGCAGTCGAAATACTTCCGAGCTCTCCTTCAACAATACAACGTAA AACCTCCGTCAGACTCGGGAAACCAGTTGGATAAGCAGCAAAAATTGAGCTGCAAGCCACCAAAAGTTTTAACGCAGGCAAAGTTCACATCATTGTATGG AAACAGCATTACGAAGCCCCTTGTCGGCATCCAAAGGAATTCCTTGGTCCCCAAAAGTAAAATGTATGAGGATTGCATGATTGTGGATAATTCTCCGTCA TACACTAATCCTAGAGGTACTGCTCTCTCAAACTATGTGAAAATTGAAGAGGAAGAAAAGGTTTCTGGAAGTCTGTTGGGGTCAAAATGTACTGGTCTCC CAAACTATGTGAAAATTGACGAGGAAGAAAAGGTTTCTGGAAATCCACTGGGGTCAAAACGTACTGGTGTCTCAAACTATGTGAAAATTGAAGGGGAAGA AAAGGTTTCTGGAAATCTAGTGGGGTCAAAACGTTCATATATGCAGACCAGGAGCCCTAGAAATGACAATTCAACGCCAGCCTGTAACGGGGAGTCAAAT ATTGACGGTTCTGGGGATGGATTCGTAACAGCAAGAGCAAAATTGGAAATGGAAGTTAGACAAAAGAAAGGTTTCACAAGATCGCCAAATGCATGCGTCT CCCCACAGACTGACAACATAAATCGGGGTTCTGGTACACGGTCTTATGGTTACTCGCGCCGTGGAATCCGTGGGAGTTTTGTTCCTCCAATAAGAACCAA CGGGGCAAATTCTGGAAATATGAGTGCCCGAATAACAGGAAAGAATGATGACACAACAGATGACTCAACAAAAAAGTGGATGGAAATCCTATGTGGTCCA GATGGCGAGCTTCCTGAAAAACTGAGGAACCTGGAACCTCGCCTTATTGAGCATGTCAGCAATGAAATTATGGATGGTGATCTTGATGTTCGGTGGAATG ATATTGCTGGATTGGAGCATGCTAAAAAGTGTGTCGCTGAAATGGTGATCTGGCCATTGCTGCGACCTGACTTATTCAAAGGATGTCGTTCTCCAGGAAA AGGCCTTCTCCTCTTTGGCCCGCCTGGAACAGGTAAGACAATGATCGGGAAAGCCATAGCAGGAGAGGCAAAAGCAACATTTTTCTACATATCCGCCAGT TCCTTGACAAGCAAGTGGATTGGCGAGGGTGAAAAGCTGGTTAGGGCCCTGTTTGGTGTCGCCTGGTGTCGTCAGCCTGCTGTAATTTTTGTTGACGAGA TAGATTCACTTTTGTCCCAGCGCAAGTCAGAAGGTGAACATGAATCTAGCAGACGTCTGAAAACGCAATTCCTGATTGAGATGGAAGGCTTTAACAGTGG CAGTGAGCAGATTCTACTTATAGGGGCAACAAATCGGCCTCAGGAACTTGATGAAGCAGCAAGGAGGCGACTTACCAAAAGACTTTATATCCCTTTACCT TCATCAGAAGCAAGAGCATGGATAGTTCGTAGTCTGTTGGAAAAGGATGGATTGTTCAAGTTATCACAGGAAGAAATAGACACCATCTGCAATCTAACTG AAGGATACTCAGGATCAGACATGAAAGGTTTAGTGAAAGATGCATCACTGGGACCCCTAAGGGAAGCCTTTAGACAAGGCTCAGAAATTACGATGGTGAG AAACGAGGACATGCGCCCTGTTACTCTTCAGGACTTCGAAAATTCATTGCAAGAAGTAAGGCCGTCCGTTTCTCCGACGGAGCTGGGTGTCTATGATGAG TGGAACAAACAATTTGGAAGCTTATCCCTTTAG
AA sequence Show only first row Show all	>Lus10041563 pacid=23146926 polypeptide=Lus10041563 locus=Lus10041563.g ID=Lus10041563.BGIv1.0 annot-version=v1.0 MDAEIANASDASPSWRKQVDDNLNRLHSLKFGADKVLEKGDFSTSYVLGLRLIGFLDSHSLSDADEALTRPIRREALSKLDSARRALVPDSDRRAFERAG RDPGPVFGSKIDIDAEKIKQSKYFRALLQQYNVKPPSDSGNQLDKQQKLSCKPPKVLTQAKFTSLYGNSITKPLVGIQRNSLVPKSKMYEDCMIVDNSPS YTNPRGTALSNYVKIEEEEKVSGSLLGSKCTGLPNYVKIDEEEKVSGNPLGSKRTGVSNYVKIEGEEKVSGNLVGSKRSYMQTRSPRNDNSTPACNGESN IDGSGDGFVTARAKLEMEVRQKKGFTRSPNACVSPQTDNINRGSGTRSYGYSRRGIRGSFVPPIRTNGANSGNMSARITGKNDDTTDDSTKKWMEILCGP DGELPEKLRNLEPRLIEHVSNEIMDGDLDVRWNDIAGLEHAKKCVAEMVIWPLLRPDLFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISAS SLTSKWIGEGEKLVRALFGVAWCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFNSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLP SSEARAWIVRSLLEKDGLFKLSQEEIDTICNLTEGYSGSDMKGLVKDASLGPLREAFRQGSEITMVRNEDMRPVTLQDFENSLQEVRPSVSPTELGVYDE WNKQFGSLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27120			P-loop containing nucleoside t...		Lus10041563 [exp]	0	1
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10024248 [exp]	10.7	0.8651
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10011131 [exp]	11.4	0.9083
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	12.2	0.9094
AT3G20490			unknown protein		Lus10019628 [exp]	13.5	0.9089
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10010523 [exp]	18.0	0.9052
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	22.4	0.9081
AT2G28660			Chloroplast-targeted copper ch...		Lus10040870 [exp]	23.7	0.8832
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	27.7	0.9080
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	29.5	0.8635
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	32.4	0.9049

Compare expression of checked genes

Lus10041563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.