Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27200 164 / 6e-52 Cupredoxin superfamily protein (.1) AT2G32300 100 / 7e-26 UCC1 uclacyanin 1 (.1) AT2G31050 93 / 7e-24 Cupredoxin superfamily protein (.1) AT2G26720 91 / 6e-23 Cupredoxin superfamily protein (.1) AT5G07475 90 / 1e-22 Cupredoxin superfamily protein (.1) AT5G26330 87 / 6e-22 Cupredoxin superfamily protein (.1) AT1G72230 83 / 3e-20 Cupredoxin superfamily protein (.1) AT3G17675 81 / 3e-20 Cupredoxin superfamily protein (.1) AT4G31840 80 / 3e-19 AtENODL15 early nodulin-like protein 15 (.1) AT2G25060 79 / 1e-18 AtENODL14 early nodulin-like protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022350 [exp] 194 / 1e-63 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 97 / 2e-25 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 95 / 2e-24 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 93 / 7e-24 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 92 / 2e-23 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 92 / 2e-23 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 89 / 3e-22 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10022800 [exp] 85 / 1e-21 AT2G02850 100 / 4e-28 plantacyanin (.1) Lus10025580 [exp] 86 / 5e-21 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332200 [exp] 187 / 2e-61 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 100 / 1e-26 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.007G120200 [exp] 99 / 9e-26 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.002G101300 [exp] 97 / 2e-25 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 96 / 2e-24 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 86 / 1e-21 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 86 / 2e-21 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.009G136200 [exp] 86 / 3e-21 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 86 / 4e-21 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 84 / 2e-20 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10041570 pacid=23146871 polypeptide=Lus10041570 locus=Lus10041570.g ID=Lus10041570.BGIv1.0 annot-version=v1.0 ATGGTGAACAACAAATCCTTCTTGATGCTGTTGTGTTTGATCTGTGTTGGAAGACAAGCTTTAGGGGCTCAGCATACAGTTGGGGGAAGCCAAGGTTGGG AGGAATCTACGGACTTCAAGTCATGGGCATCGGCACAGAAGTTCAAAGTCGGTGACCAGCTTGTGTTCAAGTTCAACTCAGGGCTGCATAGTGTGGTGGA GCTAGGGAGTGAGTCAGCCTACAAAAGCTGTGATCTTGGATCTTCATTGAACTCCATGAGCACAGGCAATGATGCGGTGAAGCTGGATAAACCGGGGACG AGGTATTTCGCTTGTGGGACAGTAGGACATTGTGGTCAAGGCATGAAGGTTAAGATCACGGTTGATTCTGGAAGTGGATCATCATCAACCCCAACTTCAC CTTCAACTTCTTCATCTTCATCTTCAACTTCTGCTGCTGTTCATTCTGTTGTTGGTGTTGGTGGCTCCAGTGTTCTGATTGCGGGACTGCTGAGTTTGAG CTTAATGCTTCAGTTGGTTTGA
AA sequence Show only first row Show all	>Lus10041570 pacid=23146871 polypeptide=Lus10041570 locus=Lus10041570.g ID=Lus10041570.BGIv1.0 annot-version=v1.0 MVNNKSFLMLLCLICVGRQALGAQHTVGGSQGWEESTDFKSWASAQKFKVGDQLVFKFNSGLHSVVELGSESAYKSCDLGSSLNSMSTGNDAVKLDKPGT RYFACGTVGHCGQGMKVKITVDSGSGSSSTPTSPSTSSSSSSTSAAVHSVVGVGGSSVLIAGLLSLSLMLQLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	1.0	0.9781
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	1.4	0.9754
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	2.4	0.9561
AT3G13130			unknown protein		Lus10016611 [exp]	5.2	0.9690
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	6.3	0.9622
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	6.5	0.9556
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	7.1	0.9425
AT3G13130			unknown protein		Lus10004415 [exp]	7.3	0.9544
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	8.9	0.9688
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	11.7	0.9544

Compare expression of checked genes

Lus10041570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.