Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 613 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 581 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 564 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 556 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 476 / 1e-166 Transmembrane amino acid transporter family protein (.1) AT3G01760 466 / 1e-162 Transmembrane amino acid transporter family protein (.1) AT1G25530 447 / 9e-156 Transmembrane amino acid transporter family protein (.1) AT1G71680 424 / 4e-146 Transmembrane amino acid transporter family protein (.1) AT1G47670 261 / 6e-82 Transmembrane amino acid transporter family protein (.1) AT4G35180 195 / 5e-57 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014606 [exp] 630 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 614 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 613 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 587 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 556 / 0 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 439 / 3e-152 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 441 / 7e-152 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034283 [exp] 416 / 2e-144 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 358 / 2e-121 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335200 [exp] 626 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 611 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 578 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 565 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 538 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 476 / 3e-167 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 472 / 3e-165 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 264 / 7e-83 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 246 / 4e-76 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 232 / 9e-71 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10041580 pacid=23147051 polypeptide=Lus10041580 locus=Lus10041580.g ID=Lus10041580.BGIv1.0 annot-version=v1.0 ATGGCTTCCGATTCCACTACTAGTAACGCTAGTGTTACTCAGGCACCCCCAGCCTTTGGAGTTCCCGTACCTCCTGAAGACATCACCGATGAGGACAGGA AGCAGCAGGCGATCGATGAATGGTTGCCGATAACCAGTTCAAGGAATGCGAAATGGTGGTACGCTGCGTTTCACAACGTCACTGCTATGGTTGGAGCTGG TGTTCTCACTCTCCCATATGCCATGGCTCACCTGGGATGGGGACCAGGAATTGTGATTCTGGTATTGTCATGGATCATCACCCTGTACACACTGTGGCAG ATGGTGGAGATGCACGAGATGGTTCCGGGGAAGCGTTTCGATCGGTACCACGAGCTGGGACAGCAGGCCTTTGGGGAAAAGATGGGACTGTACATTGTAT GCCCACAGCAGCTGGTGTGTGAAGTTGGTGTGGACATAGTGTACATGGTCACAGGAGGCCAGTCCCTGAAGAAGATCCACGAATTGATGAGCAACAAGTC CATCAAGACTACTTACTGGATCATGATCTTTGCTTCAGTCCACTTTGTCCTTGCTCATCTCCCAAATTTCAACTCCATCTCCGTTGTCTCTTTGGCTGCA GCTGTCATGTCTTTGAGTTACTCGACGATAGCATGGGCGGCATCGGTGGACAGGGGGAGACAGGCAGATGTGAGTTACGCAGCTACAGGTAAAACGACAT TAGATTCAATGTTCAACTTCTTTAGTGCACTTGGGGAGGTGGCATTTGCATACGCGGGACACAATGTGGTGTTGGAGATTCAAGCAACAATACCGTCGAC GCCGGAGAAGCCGTCAAAGGGACCGATGTGGAAAGGAGTTATAGTAGCTTACATAGTGGTGGGGCTATGTTACTTCCCAGTGGCTATATGTGGTTATTAT GTATATGGTAACGCCGTTGAGGACAACATCCTCATCTCCTTGGAGAAACCTGCTTGGCTCATTGCAACTGCCAATGCCTTTGTCGTCATCCACGTCATCG GCAGCTACCAGCTCTTTGCGATCCCTGTCTTCGACATGATGGAGACCATGCTCGTCAAGAAACTCCACTTCAAGCCTACTACAATGCTTCGTTTTACTGC TCGCAATATATACGTTGGACTGACCATGTTTGTGGGTATGACCTTCCCATTCTTCGCCTCTTTGCTTTCTTTCTTCGGAGGATTCGCCTTTGCTCCAACC ACCTACTTTACCTGCATCATACTTGGATTTCTGCTGATGTTTCTGGCACCAATAGGAGCTTTAAGGAATATAATCAAACATTCACAAGAATACAAGTTCT ACCAGTAG
AA sequence Show only first row Show all	>Lus10041580 pacid=23147051 polypeptide=Lus10041580 locus=Lus10041580.g ID=Lus10041580.BGIv1.0 annot-version=v1.0 MASDSTTSNASVTQAPPAFGVPVPPEDITDEDRKQQAIDEWLPITSSRNAKWWYAAFHNVTAMVGAGVLTLPYAMAHLGWGPGIVILVLSWIITLYTLWQ MVEMHEMVPGKRFDRYHELGQQAFGEKMGLYIVCPQQLVCEVGVDIVYMVTGGQSLKKIHELMSNKSIKTTYWIMIFASVHFVLAHLPNFNSISVVSLAA AVMSLSYSTIAWAASVDRGRQADVSYAATGKTTLDSMFNFFSALGEVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVIVAYIVVGLCYFPVAICGYY VYGNAVEDNILISLEKPAWLIATANAFVVIHVIGSYQLFAIPVFDMMETMLVKKLHFKPTTMLRFTARNIYVGLTMFVGMTFPFFASLLSFFGGFAFAPT TYFTCIILGFLLMFLAPIGALRNIIKHSQEYKFYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10041580 [exp]	0	1

Compare expression of checked genes

Lus10041580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.