Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 711 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 633 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 630 / 0 Transmembrane amino acid transporter family protein (.1) AT1G67640 604 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 529 / 0 Transmembrane amino acid transporter family protein (.1) AT3G01760 519 / 0 Transmembrane amino acid transporter family protein (.1) AT1G25530 478 / 2e-167 Transmembrane amino acid transporter family protein (.1) AT1G71680 444 / 7e-154 Transmembrane amino acid transporter family protein (.1) AT1G47670 275 / 8e-87 Transmembrane amino acid transporter family protein (.1) AT4G35180 189 / 1e-54 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022329 [exp] 823 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 685 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 667 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 565 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 509 / 2e-180 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041482 [exp] 476 / 2e-166 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 458 / 4e-158 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 409 / 3e-141 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2) Lus10034283 [exp] 405 / 4e-140 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335300 [exp] 722 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 677 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 636 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 634 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 585 / 0 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 494 / 7e-174 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 492 / 5e-173 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 284 / 2e-90 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 275 / 7e-87 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 255 / 2e-79 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10041581 pacid=23146706 polypeptide=Lus10041581 locus=Lus10041581.g ID=Lus10041581.BGIv1.0 annot-version=v1.0 ATGGTGGGTACTGTGCCACTTGCTAATCACAACCAGCAAGACATGGATGAGAAGCTAGCAAAGCAGAAAGCAATTGATGAATGGCTACCAATTACTGGAT CAAGGAATGCCAAATGGTGGTATGCAGCCTTCCATAATGTCACTGCTATGGTTGGAGCTGGTGTTCTTAGTCTCCCTTATGCCATGTCCGAGCTCGGTTG GGGTCCTGGTGTGGTTGTCCTGGTGCTTTCATGGGTCATCACCCTATACACTCTGTGGCAGATGGTTGAGATGCATGAGATGGTACCGGGGAAGCGTTTC GATCGATACCACGAGCTTGGGCAGCATGCTTTCGGCGAGAAGCTTGGACTTTACATCGTTGTCCCACAGCAACTGATTGTCGAAGTTGGTGTCTGCATTG TGTACATGGTTACCGGAGGCAGATCGCTCAAGAAGTTCCATGACCTTGTCTGCAAAGATTGCAAGGACATCAAGCTCACTTTCTTCATCATGATTTTCGC ATCAGTCCACTTCGTTCTCTCGCATCTCCCCAACTTCAATTCCATCTCTGGTGTCTCTCTGGCTGCTGCTGTCATGTCCTTGAGTTACTCGACCATTGCT TGGAGTGCATCGCTTAAGAAGGGGGTACAACCAGATGTTCAGTATGGATACAAAGCCAAGAGCACATCAGGAACAGTGTTCAACTTCTTCAGTGCACTTG GAGATGTGGCATTTGCATATGCAGGGCACAATGTGGTGTTGGAGATTCAAGCAACCATTCCATCCACACCTGAGAAGCCATCCAAGGGTCCTATGTGGAG AGGAGTCATAGTGGCATACATTGTCGTGGCACTTTGTTACTTTCCAGTTGCTTTGATTGGCTACTGGATGTATGGAAACTCAGTTCAGGACAACATCCTC ATCTCCTTGGACAAGCCCGCCTGGCTCATTGCCATGGCTAACATGTTTGTGGTCATCCATGTCATTGGAAGCTACCAGATATACGCAATGCCTGTGTTTG ACATGATGGAAACCTTGTTAGTCAAGAAGCTCAACTTTAGTCCCACCTGGTACCTTCGATTCTGCGTTCGCAACTTCTATGTTGCTGTGACTATGTTCAT CGGTATCACCTTCCCTTTCTTCGGTGGCCTCCTTGGTTTCTTCGGAGGATTCGCTTTCGCACCAACAACTTACTTTCTGCCTTGTGTAATGTGGCTTGCC ATCTACAAGCCAAGGAAATTCAGCTTATCTTGGTGGACTAATTGGATATGCATAGTTTTCGGAGTGTTGCTGATGGTCCTCTCGCCGATTGGTGGGTTGA GGCAAATCATCATTCAAGCCAAGGACTACAAGTTCTACTCTTAG
AA sequence Show only first row Show all	>Lus10041581 pacid=23146706 polypeptide=Lus10041581 locus=Lus10041581.g ID=Lus10041581.BGIv1.0 annot-version=v1.0 MVGTVPLANHNQQDMDEKLAKQKAIDEWLPITGSRNAKWWYAAFHNVTAMVGAGVLSLPYAMSELGWGPGVVVLVLSWVITLYTLWQMVEMHEMVPGKRF DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGRSLKKFHDLVCKDCKDIKLTFFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIA WSASLKKGVQPDVQYGYKAKSTSGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALIGYWMYGNSVQDNIL ISLDKPAWLIAMANMFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFSPTWYLRFCVRNFYVAVTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCVMWLA IYKPRKFSLSWWTNWICIVFGVLLMVLSPIGGLRQIIIQAKDYKFYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10041581 [exp]	0	1
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	6.2	0.8919
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	8.9	0.8666
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	13.0	0.8906
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10028527 [exp]	18.0	0.8739
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	25.1	0.8712
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	27.7	0.8736
					Lus10033269 [exp]	29.6	0.8899
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	32.2	0.8537
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	38.2	0.8676
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	38.4	0.8540

Compare expression of checked genes

Lus10041581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.