Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 325 / 4e-108 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 270 / 1e-87 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT2G28550 244 / 2e-76 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G60120 139 / 2e-36 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT5G57390 139 / 4e-36 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT4G37750 137 / 3e-35 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 133 / 1e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 134 / 2e-34 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 133 / 8e-34 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 128 / 3e-32 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004990 [exp] 549 / 0 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 333 / 1e-110 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 322 / 4e-106 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10026477 [exp] 245 / 8e-78 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 247 / 5e-77 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019905 [exp] 243 / 3e-75 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10023165 [exp] 244 / 4e-75 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10015055 [exp] 236 / 1e-72 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10036141 [exp] 227 / 4e-69 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046200 [exp] 353 / 2e-117 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 344 / 1e-114 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.006G132400 [exp] 261 / 2e-82 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 261 / 5e-82 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 253 / 2e-79 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.010G216200 [exp] 208 / 3e-62 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.001G018400 [exp] 138 / 8e-36 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 138 / 2e-35 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 137 / 3e-35 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.017G078600 [exp] 134 / 3e-35 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10041595 pacid=23146743 polypeptide=Lus10041595 locus=Lus10041595.g ID=Lus10041595.BGIv1.0 annot-version=v1.0 ATGTGGGACTTGAATGACTCGCCTGATCAGAGGATAGCAGAAGACGCCTCCTGTTCTTCCCAGAGGACGGAGGAGGATGCTACCGACAAGGGTAAACGGG TCGGATCGGTTTCAAATTCCAGCTCATCCGGCGTCCCAACGCCCATGGACGACGGATCGGACGACGAAGCTGGAGCCCTGATGGTTAGGAACAAGATATT CGGGTTCTCTGTAGCAGGAGGTGAGGAAGAATACGAGGAGGAGGAAGAAGAAGATGAAGAAGGTATAGCGAGTCCAGTGACCAGACAGTTCTTCCCGATG GAAATGGGGGCTCCATCAGTCGGTGAGGTTGGTGGGGGGTTTCCACGGGCCCACTGGGCAGGAGTGAGGTTCTGCCAATCGGAATCTAGTGCGCAAAGGC CAGTCGTCGGGGGTGGAGTGGAGATGGGGCAACAGCCGTTGAAGAAGAGCAGGCGGGGACCACGGTCAAGAAGCTCCCAGTATAGAGGAGTCACCTACTA CCGGAGAACCGGCCGCTGGGAATCCCACATTTGGGATTGCGGGAAGCAGGTGTATCTGGGGGGATTTGACACTGCACATGCAGCTGCACGGAGCAGTGCG TATGATAGAGCGGCGATCAAGTTCAGAGGTGTGGAGGCTGACATTAACTTCAGCATTGAAGATTACCAAGACGACCTCAAACAGATGAACAATCTGACCA AGGAGGAGTTTGTGCATGTACTTCGCCGACAAAGCACCGGTTTCCCCAGAGGGAGCTCCAAATATAGAGGAGTCACTTTGCACAAGTGTGGTCGCTGGGA AGCCCGTATGGGCCAATTCCTCAGCAAAAAGTATGTGTACTTGGGTTTGTTTGATACTGAGGTTGAAGCTGCCAGGGCTTATGATAAGGCTGCAATTAAG TGCAACGGCAAGGATGCGGTGACCAATTTTGATCCCAGTATTTACGATGACGAATTCAACACCAACTACTCTCTTTCCGGTAGCAGTAATATTAGCGCTG CCGATCACAATCTTGATCTGAGTTTAGGGAATAACATTGCTTCTTCTTCTTCTGGTATGGGACCCAATCCTGGCTCGCAAAATCCAGGATTATTGAGGCC TCAGCTGATGAGGGCATATGGGAGTGAGAATACTGGTAGTGAAGAAGAGCAAAGAAGAGGAAGCAACGAGACGGAAGCAGTGCAGCTACTGAGCCAAACC CACATCCGCTCTCCTCCTCCCCACAATTTCATATCTTTGGATTTCCAGGTCGTTGCTTAA
AA sequence Show only first row Show all	>Lus10041595 pacid=23146743 polypeptide=Lus10041595 locus=Lus10041595.g ID=Lus10041595.BGIv1.0 annot-version=v1.0 MWDLNDSPDQRIAEDASCSSQRTEEDATDKGKRVGSVSNSSSSGVPTPMDDGSDDEAGALMVRNKIFGFSVAGGEEEYEEEEEEDEEGIASPVTRQFFPM EMGAPSVGEVGGGFPRAHWAGVRFCQSESSAQRPVVGGGVEMGQQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARSSA YDRAAIKFRGVEADINFSIEDYQDDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLSKKYVYLGLFDTEVEAARAYDKAAIK CNGKDAVTNFDPSIYDDEFNTNYSLSGSSNISAADHNLDLSLGNNIASSSSGMGPNPGSQNPGLLRPQLMRAYGSENTGSEEEQRRGSNETEAVQLLSQT HIRSPPPHNFISLDFQVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	0	1
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10035111 [exp]	6.5	0.7993
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	8.1	0.8511
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	9.5	0.7718
					Lus10005392 [exp]	12.0	0.7823
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	13.2	0.8145
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	14.4	0.8259
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	14.4	0.8324
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	22.9	0.8184
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	27.0	0.7726
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	28.7	0.7993

Compare expression of checked genes

Lus10041595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.