Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79700 274 / 2e-90 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G16060 266 / 8e-87 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT3G54320 247 / 2e-78 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G57390 212 / 2e-63 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G72570 207 / 2e-63 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 210 / 6e-63 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 208 / 6e-62 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 207 / 9e-62 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 200 / 4e-59 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 195 / 7e-58 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024101 [exp] 496 / 5e-177 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10001553 [exp] 315 / 1e-105 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10036719 [exp] 238 / 1e-74 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 237 / 3e-74 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 236 / 6e-74 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 234 / 3e-73 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 234 / 1e-72 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008939 [exp] 234 / 2e-72 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 228 / 2e-72 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185300 [exp] 338 / 4e-115 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.018G102200 [exp] 300 / 4e-100 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 296 / 4e-98 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G179900 [exp] 273 / 1e-89 AT1G16060 276 / 3e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 243 / 2e-77 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G247200 [exp] 243 / 8e-77 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 242 / 2e-76 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 234 / 3e-74 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G205700 [exp] 213 / 6e-64 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 212 / 1e-63 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10041618 pacid=23147016 polypeptide=Lus10041618 locus=Lus10041618.g ID=Lus10041618.BGIv1.0 annot-version=v1.0 ATGGCCAAGATGTCAAAGAAAACCAAGGGTAGCGAGATTAGTAACAAGTCATCAGGGAAGAGGACAAGGAAGAGTGTGCCCAGAGATTCACCTCCAAAGC GCAGCTCCGTCTACAGAGGCGTCACCAGGCACCGGTGGACTGGAAGGTATGAAGCTCATTTGTGGGATAAGAACAGCTGGAATGATTCCCAGAACAAGAA GGGCAGGCAAGTGTATTTAGGGGCGTACGACGAAGAAGAAGCCGCAGCACATGCCTACGACTTGGCTGCACTGAAGTACTGGGGTCCTCATACCATCCTT AATTTCCCTTTGGAAACTTATGACAAGGAAACCATGGAGATGGAGGGGCAGTCCAAAGAAGAATACATTGGCTCCTTGAGAAGAAAAAGCAGCGGCTTCT CCCGCGGCGTCTCCAAGTACAGAGGCGTCGCTAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTCTTTGGCAACAAATACCTCTACCT TGGAACCTATGCCACTCAAGAAGAAGCAGCCACAGCATATGACATGGCAGCCATAGAGTACAGGGGACTTAACGCCGTCACCAACTTCGACCTCAGCCGT TACATCCACTCCCTCCGCCCTAACGGAACTCAAACTCCATCCACCTCTAACGGCGACCCTACTACGCCGCTGGTCGATGAAGATATTCATTCTCCGTTCC AAGACGCCGTCGTTGTGAATCATCTAGCTGCTGCTTCACCTTCACCTACCCATTTCTTCAACCACACAGCAAGCCCCGCCGGAAGCACCACTCCGTCGGG AATAATATCCGGCAGCAGCGGCGGTTCACCTTCGTCCTCATCGACGACGTCTGCACTAGGGCTTCTGCTACAATCCTCCAAGTTCAAGGAAATGCTGGAG AGAACTTCCAGAAGTACGGCTACTACTACCGACTCCCGCCCTTCGACGCCGGCGCCGGAGGTATCCGACCATCGGCTTCCGCGGCGGAGCTTCCCGGAAG ATATTCAGACGTACTTCGGCTTCGGCGAGGAGATCCTTCTCGGGAACTTGAATGATTATGTTTCGCCCATTTTTCACTGCGACCTGGATGGTTAG
AA sequence Show only first row Show all	>Lus10041618 pacid=23147016 polypeptide=Lus10041618 locus=Lus10041618.g ID=Lus10041618.BGIv1.0 annot-version=v1.0 MAKMSKKTKGSEISNKSSGKRTRKSVPRDSPPKRSSVYRGVTRHRWTGRYEAHLWDKNSWNDSQNKKGRQVYLGAYDEEEAAAHAYDLAALKYWGPHTIL NFPLETYDKETMEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSR YIHSLRPNGTQTPSTSNGDPTTPLVDEDIHSPFQDAVVVNHLAAASPSPTHFFNHTASPAGSTTPSGIISGSSGGSPSSSSTTSALGLLLQSSKFKEMLE RTSRSTATTTDSRPSTPAPEVSDHRLPRRSFPEDIQTYFGFGEEILLGNLNDYVSPIFHCDLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	0	1
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	3.2	0.9495
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	6.8	0.9450
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Lus10026863 [exp]	10.4	0.9221
AT2G14095			unknown protein		Lus10001299 [exp]	11.2	0.9275
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	12.2	0.9365
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	12.6	0.9222
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	13.1	0.9392
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	17.3	0.9069
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	19.8	0.9266
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	23.8	0.9250

Compare expression of checked genes

Lus10041618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.