Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73110 633 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G39730 325 / 1e-107 RCA rubisco activase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004708 [exp] 348 / 1e-116 AT2G39730 733 / 0.0 rubisco activase (.1.2.3) Lus10040275 [exp] 348 / 3e-116 AT2G39730 730 / 0.0 rubisco activase (.1.2.3) Lus10000518 [exp] 343 / 4e-114 AT2G39730 790 / 0.0 rubisco activase (.1.2.3) Lus10002710 [exp] 342 / 8e-114 AT2G39730 787 / 0.0 rubisco activase (.1.2.3) Lus10003234 [exp] 337 / 7e-112 AT2G39730 757 / 0.0 rubisco activase (.1.2.3) Lus10010868 [exp] 332 / 2e-110 AT2G39730 642 / 0.0 rubisco activase (.1.2.3) Lus10035616 [exp] 155 / 8e-44 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3) Lus10024092 [exp] 68 / 5e-14 AT1G73110 52 / 4e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037300 [exp] 687 / 0 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G101100 [exp] 348 / 1e-116 AT2G39730 696 / 0.0 rubisco activase (.1.2.3) Potri.008G058500 [exp] 347 / 1e-115 AT2G39730 803 / 0.0 rubisco activase (.1.2.3) Potri.010G200500 [exp] 340 / 4e-113 AT2G39730 797 / 0.0 rubisco activase (.1.2.3) Potri.003G187601 [exp] 83 / 2e-19 AT1G73110 78 / 3e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10041627 pacid=23147046 polypeptide=Lus10041627 locus=Lus10041627.g ID=Lus10041627.BGIv1.0 annot-version=v1.0 ATGGCCCTCTTCAACCTTCACTCCTCAACTCTTCCCTTTCCGATCGCCGTCTCAGTCTCACCGTCCAGATCCTCCTTCAGACGAATTCCGTGCCCGTCGT TCGTCACCGTTTCTTGCTCTAAATCACCGTCGCCTTCATCCTCGTCTTCGTCTCCTATAGGGGACAGCCAGAATGATGAAAAAGAATTGTCAAAGAGGAG GAGATTGTCGGAGCAATCTTCGTGGGAATCCAAAGACTCCGAGGGGAAAGATTACCTCTATCGGCTGGGGAAAGAAGCGGATAATATGAACATTTCCGTC GGTGCTAAGGATGGCGTCATTGACTCTCTCTTCACCGGGACTTTTCTCGGCAGAGACTCGGATATTGTGTTTGATTACAGGCAAAAAGTGACGAGGTCAT TTGAGCATCTCCAGGGTGATTACTACATTGCTCCGCTCTTCATGGATAAAGTTGTGTGTCACATTGTAAAGAACTACATTGCTCATCTACTGGATGCCAA AGTCCCTTTGATCCTAGGTATTTGGGGAGGAAAAGGGCAAGGGAAATCATTCCAGACTGAACTTATTTTCCAAACCCTGGGACTGGAACCAGTTATAATG TCGGCTGGAGAACTAGAGTCGGACAGGGCGGGGGAACCGGGAAGACTGATTCGAGAACGCTATCGAACTGCTTCCCAAGTGGTCCAGAATCAAGGGAAGA TGAGTTGTTTGATGATCAATGACCTTGATGCTGGAATTGGTAGATTTGGAAACACTCAACACACAGTCAACAACCAAATTGTCGTTGGGACTCTAATGAA TTTATCAGATAATCCTACAAGAGTTAGTATTGGACAAGAATGGAGAGAAGCAGATGTCACAAACCGAATCCCTATTATCGTAACTGGAAATGACTTTTCA ACAATCTATGCACCGTTGATACGTGACGGACGAATGGATAAGTTCTACTGGCAGCCTACACAGGAAGACATAATCAATATTGTTCACAGAATGTATGAGA AAGATGACATTCCAAAGGACGAGGTTGTCAAGATTGTGAACACCTTTCCAAACCAAGCTTTGGACTTCTACGGTGCTGTAAGGTCCCGAACATATGACAA AGCAATTTTGAAGTGGGTTGATGATAATGGAGGCTTCGAAAAGATCGGCATTAAGCTTCTACGAAGGAAAAAGAATGAGGCCCTCCCTGTTTTTACTCCC CCGGAGCAATCGTTGGAGGCTCTGCTGGAAGCTGGTTATTCTCTAATGAGAGAACAGCAGCTCATAATGGAGACTAAACTCTCCAAGGAATACATGAAAA ACGTTGAAGACTAG
AA sequence Show only first row Show all	>Lus10041627 pacid=23147046 polypeptide=Lus10041627 locus=Lus10041627.g ID=Lus10041627.BGIv1.0 annot-version=v1.0 MALFNLHSSTLPFPIAVSVSPSRSSFRRIPCPSFVTVSCSKSPSPSSSSSSPIGDSQNDEKELSKRRRLSEQSSWESKDSEGKDYLYRLGKEADNMNISV GAKDGVIDSLFTGTFLGRDSDIVFDYRQKVTRSFEHLQGDYYIAPLFMDKVVCHIVKNYIAHLLDAKVPLILGIWGGKGQGKSFQTELIFQTLGLEPVIM SAGELESDRAGEPGRLIRERYRTASQVVQNQGKMSCLMINDLDAGIGRFGNTQHTVNNQIVVGTLMNLSDNPTRVSIGQEWREADVTNRIPIIVTGNDFS TIYAPLIRDGRMDKFYWQPTQEDIINIVHRMYEKDDIPKDEVVKIVNTFPNQALDFYGAVRSRTYDKAILKWVDDNGGFEKIGIKLLRRKKNEALPVFTP PEQSLEALLEAGYSLMREQQLIMETKLSKEYMKNVED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	0	1
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029728 [exp]	1.4	0.9691
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029727 [exp]	2.0	0.9691
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	3.0	0.9642
AT3G47070			unknown protein		Lus10005866 [exp]	4.9	0.9576
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	4.9	0.9539
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	5.8	0.9354
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	6.3	0.9539
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	6.7	0.9458
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	8.0	0.9371
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	8.4	0.9479

Compare expression of checked genes

Lus10041627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.