Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36710 452 / 7e-155 GRAS AtHAM4 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) AT4G00150 187 / 2e-52 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT2G45160 176 / 1e-47 GRAS ATHAM1, LOM1 LOST MERISTEMS 1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, GRAS family transcription factor (.1) AT3G60630 169 / 3e-45 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) AT1G66350 115 / 4e-27 GRAS RGL1 RGA-like 1 (.1) AT2G01570 110 / 1e-25 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G54220 110 / 2e-25 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 103 / 1e-23 GRAS GRAS family transcription factor (.1) AT5G17490 99 / 8e-22 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 99 / 1e-21 GRAS RGL2 RGA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024029 [exp] 996 / 0 AT4G36710 452 / 4e-155 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10028934 [exp] 236 / 4e-69 AT4G00150 397 / 7e-130 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10004353 [exp] 234 / 2e-68 AT4G00150 390 / 2e-127 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10041540 [exp] 128 / 4e-31 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 128 / 6e-31 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 120 / 8e-29 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 120 / 1e-28 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10033583 [exp] 112 / 7e-26 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 110 / 3e-25 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029200 [exp] 586 / 0 AT4G36710 419 / 4e-142 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.005G125800 [exp] 576 / 0 AT4G36710 466 / 1e-160 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.003G110800 [exp] 226 / 4e-65 AT4G00150 366 / 2e-117 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G122800 [exp] 225 / 7e-65 AT4G00150 376 / 1e-121 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060500 [exp] 192 / 3e-53 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144200 [exp] 189 / 5e-52 AT4G00150 411 / 2e-135 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060200 [exp] 187 / 3e-51 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144700 [exp] 179 / 2e-48 AT4G00150 437 / 2e-145 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G326000 [exp] 121 / 8e-29 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 117 / 1e-27 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10041721 pacid=23147079 polypeptide=Lus10041721 locus=Lus10041721.g ID=Lus10041721.BGIv1.0 annot-version=v1.0 ATGAAAGTTCCACTTCCAGTTTCCTCCTGCAAATCCAACCTCCTCAATTCCGACCCATTAATCCCAACGCCTCCTCGCACCACCACCACCACCAACAATA ATCTCTCCCTCGCTCCTTCCATCTGCTACGAACCCACCTCCGTCCTCGAACTCGGTCGCACCCCTACTAGCCCCGTCACCACCAAACCCCCTGCAGCAGA CCCCATCGATTGGGATGATCACGTCCTCGAGAATTTCAATTGGGATTCCATCATGAAGGAATTAGATTTCCATGATCATAACAATAACAATACTAACAAT CCCATCAAGCCCACCAATCTCATTAATCTCCCCCACTTCGACACGCCATCCGCAGGGGATCATCATCACGTTTTCGGATCTTCTCTACCCGGCCTCGACC AATCCACCCAGTTCGTCCATCATCCCGACTACGCCGACGTTTTCCTCAATTCAATCCCCAACACCCACGATTTCAGCACCTCAGAGCTTTCCCACCACAG CTTCCCCAATTCCAATTCGAATTTGCCAGGGTTCGATTCGGTGCAGGAGCTGATTCGAGCCGCGGACTGCTTCGATTCGAACCAGTTCCAGCTCGCTCAC GCGATATTGGAGCGGCTCAATTCCCGACTTCCGTCGTCAGGAAAGCCGCTCCACCGTGCGGCCATCTTCTTCAAAGAAGCTCTGCAGTCTCTGCTCACGG TTTCGACTCGCCCCCCTGCTTATCTCTCGACCTGGTCTGAAACGGTGGAGACGATTAGGGCTTACAGAGCCTTCTCAGGGATATCTCCGATTCCGATGTT CGCTCACTTCACCGCCAATCAGGCGTTGCTGGACTCGTTAGACGGACCTTCGTCGCCGTTCATCCACGTCGTGGATTTTGATATCGGGCTAGGATGTCAG TACGCTTCGTTCATGCGGGAGCTGGCGGAGCGGGGATCCGTTGAGGGGGGATACGTTTGTAAATTCGGAGCCGCGATTCTCCGGGTGACGGCGGTGGTTA CGGAGGAGTACGCGATCGAGACGAAGTTGATTAGAGAAAGTCTGACTCAATTCGCCGACGAGTTGAAATTGAGGTTCCAGATTGAGTTCGTGCTTCTCCG GACTTTCGAAATGCTGTCGTTTAAGTCGATTAAGTTCGTTGAAGGAGAGAAGACGGCCGTTCTGTTATCCCCTTTTATTTTCCGCCGTTTGAGCCTGACG AGCGGAGTGACGGCGTTTATTTCGGATCTTCGGCGGATGTCTCCAAGCGTGGTCGTTTTTGTCGACGGGGAAGCGTGGGGGGAGTCCGGAACGTCGTCGT TCAGGAGGAACTTCGTGAATAATTTGGAATTCTATTCGATTATGTTCGAGTCCTTGGACGGCGGCGGCGCGGCGATGGGGAGCGGAGATTGGGTGAGGAA GATCGAGATGCTGCTGATGAGACCGAGGATTTTGGCGGCGGTGGAAGGGTGCGGACGAGGGGCGGCGCTGCCGCCGTGGAAGGAGGTGTTCGCCGGGGCG GGGATGTGGCCGATCGGGTGGAGTCAGTTTGCTGACTTTCAAGCGGAGACGCTGCTGGGGAAAGTTCAGTCGAGGGGATTCTACGTGGCGAAACGGCAGG CTGAGTTGGTGCTTTGCTGGCATGATCGGCCACTAGTTGCCACATCAGCATGGAGGTGTTAG
AA sequence Show only first row Show all	>Lus10041721 pacid=23147079 polypeptide=Lus10041721 locus=Lus10041721.g ID=Lus10041721.BGIv1.0 annot-version=v1.0 MKVPLPVSSCKSNLLNSDPLIPTPPRTTTTTNNNLSLAPSICYEPTSVLELGRTPTSPVTTKPPAADPIDWDDHVLENFNWDSIMKELDFHDHNNNNTNN PIKPTNLINLPHFDTPSAGDHHHVFGSSLPGLDQSTQFVHHPDYADVFLNSIPNTHDFSTSELSHHSFPNSNSNLPGFDSVQELIRAADCFDSNQFQLAH AILERLNSRLPSSGKPLHRAAIFFKEALQSLLTVSTRPPAYLSTWSETVETIRAYRAFSGISPIPMFAHFTANQALLDSLDGPSSPFIHVVDFDIGLGCQ YASFMRELAERGSVEGGYVCKFGAAILRVTAVVTEEYAIETKLIRESLTQFADELKLRFQIEFVLLRTFEMLSFKSIKFVEGEKTAVLLSPFIFRRLSLT SGVTAFISDLRRMSPSVVVFVDGEAWGESGTSSFRRNFVNNLEFYSIMFESLDGGGAAMGSGDWVRKIEMLLMRPRILAAVEGCGRGAALPPWKEVFAGA GMWPIGWSQFADFQAETLLGKVQSRGFYVAKRQAELVLCWHDRPLVATSAWRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	0	1
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	3.5	0.9184
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	3.7	0.9122
AT2G22790			unknown protein		Lus10011575 [exp]	4.5	0.8768
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	4.6	0.8673
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022548 [exp]	4.9	0.8803
					Lus10022802 [exp]	6.5	0.8879
AT2G46630			unknown protein		Lus10005994 [exp]	7.5	0.8953
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	7.7	0.8921
					Lus10028522 [exp]	8.1	0.8914
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10043002 [exp]	8.2	0.8225

Compare expression of checked genes

Lus10041721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.