Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66770 483 / 1e-164 GRAS GRAS family transcription factor (.1) AT3G50650 431 / 9e-145 GRAS SCL7 GRAS family transcription factor (.1) AT3G03450 192 / 1e-53 GRAS RGL2 RGA-like 2 (.1) AT3G54220 181 / 9e-49 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G48150 176 / 3e-48 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 175 / 3e-47 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50600 173 / 1e-46 GRAS SCL5 scarecrow-like 5 (.1) AT5G17490 170 / 8e-46 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G04890 165 / 6e-45 GRAS SCL21 SCARECROW-like 21 (.1) AT1G63100 168 / 3e-44 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024014 [exp] 896 / 0 AT5G66770 590 / 0.0 GRAS family transcription factor (.1) Lus10016596 [exp] 188 / 3e-52 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 186 / 3e-51 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10041540 [exp] 187 / 7e-51 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 187 / 2e-50 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10036623 [exp] 182 / 2e-50 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10033583 [exp] 182 / 2e-49 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 177 / 6e-48 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016496 [exp] 179 / 8e-48 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123800 [exp] 511 / 1e-175 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.007G026300 [exp] 501 / 2e-171 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.001G473200 [exp] 195 / 1e-55 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 193 / 5e-55 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 192 / 2e-54 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G361700 [exp] 191 / 3e-53 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G326000 [exp] 189 / 9e-52 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.011G131100 [exp] 186 / 2e-51 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.001G409500 [exp] 185 / 9e-51 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.017G125200 [exp] 182 / 1e-49 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10041740 pacid=23146758 polypeptide=Lus10041740 locus=Lus10041740.g ID=Lus10041740.BGIv1.0 annot-version=v1.0 ATGGCCTATATGTGTGCGGACAGTGGAAATCTAATGGCGATAGCCCAACAAGTGATAAAGCAAAAGCAGCAGAGAGAGCAGGAACAGCAACAGCAAAACC ACCACCAGCAGCAGCAGCAACAAATATTGGGGATGACGACTTCCTTTCCTTTGACTCCTTGGCCCGGTTCAACCCCTGCGAATCCCAATCTAGGTTACGG GCTACCCGCTGCCCCTGGGTTTTCCGACCCGTTTCAAGTCCCTCCAGCTACAGACGCTGCCGAGGTTGGATTCCCGTTCCCCCAAATCGACCACCACCAC GCTGGCGGCGGTGGAACCGGGTTTAGGTTCTCGGATTTCGGAGGCGGTGCCCCGGGTGAGTTTGACTCGGACGAGTGGATGGATAGTTTAATGGGCGGTG GAGACTCAACGGATAGTTCCAATCTTCCTTCTGCTTGCGACACGTGGCAAAGCAACCCTGCTGATTTTTGTCTCTACAGTTCCGATTCGTTTCGACTCAA CGTAGCCTGCTCCCCTTCGTCAGATCTCAATCGGATCCTTTTCCCCGAACCCGCTCTTAAAGCCCAAAATCCGATCCAGCCACTTCCTACCTGGAATCCC CCATCCTCGCCTCCACCACCGCCACCGGAGGCGGCTGCGACTGCGGCTGTTAAAGAAGTTAAGTCGGCCAACACATCTCCTCCTCCTCCTTCACCGCCGG TACCGAAACCCCCAGCGGGTCCCACAGTATGTTCCAATTTACTAGAAATAGAACCGTCGTCACCGCCGCTTTTGCAATCCCTACTGGAGTGTGCTCGACT CTCCGAATCAGAAACCGAATCAGCCGTTAAATCACTGGTTAAAATCAGGGTGTCGGCGTCGGAGCATGGAAATCCAACTGAGCGGGTCGCGTATTACTTC TCCGAAGCTCTATACAATCGGCTCTCTAAGCAAGCTGGGGAAAGCTTTACCATGTTCGAGACCACCAGCGAAGAGTTCACTCTGTCCTACAAATCACTAA ACGACGCTTGCCCGTATTCGAAGTTCGCTCACTTGACGGCGAACCAAGCCATTCTCGAGGCAACGGAAACGGCGACGAAGATTCACATAGTGGATTTCGG AGTCGTTCAAGGGGTTCAATGGGCGGCTCTATTGCAAGCTTTGGCGACCCGGTCGGCTGGCAAACCCGTTCTGGTTCGGATTTCGGGTATACCAGCCCCA GCTCTGGGAAGTTCACCTGCTGCCTCTCTCTTCGCTACTGGGAAAAGGCTTCTGGATTTCGCCAAGCTATTGGATCTGAACTTCGAGTTCGAACCGATAC TTACTCCGATACAGGACCTGAACGAATCTTGCTTCCGGGTCGAACCAGATGAGGTATTAACCGTCAATTTCATGCTTCAGCTATTCAATTTACTGGACGA GACTACGGCCACGGTAGAGACGGCTCTGAGAATGGCGAAATCGCTGAACCCGAGGATCGTCACTCTTGGCGAGTACGAAGTGAGCTTGAATCGAATTGGA TACCTGACCCGGTTCAACAACGCACTGAAATACTACTCCGCAGTGTTCGAGTCTCTGGAGCCGAGCTTGAGCAGAGACTCGACGGAGAGGCTTGAAGTGG AAAGGATGTTGCTTGGTCGGAGAATCGCCGGAGTAATTGGCCCCGAGGAACCCGGAGTCGTCCAAAGGGAGCGGATGGAAGACAGGGAGCAGTGGCGATT GCTGATGGAGAAGTGCGGTTTCGAATCAGTAGCACTGAGCAATTATGCAATGAGTCAGGCTAAGATCCTCCTGTGGAACTATAACTACAGCCCGCGGTAC TCTCTGGTGGAATCCAAACCTGGTTTCGTCTCATTAGCCTGGAAAGAAGTTCCTCTCCTCACTGTTTCTTCATGGCGTTAA
AA sequence Show only first row Show all	>Lus10041740 pacid=23146758 polypeptide=Lus10041740 locus=Lus10041740.g ID=Lus10041740.BGIv1.0 annot-version=v1.0 MAYMCADSGNLMAIAQQVIKQKQQREQEQQQQNHHQQQQQQILGMTTSFPLTPWPGSTPANPNLGYGLPAAPGFSDPFQVPPATDAAEVGFPFPQIDHHH AGGGGTGFRFSDFGGGAPGEFDSDEWMDSLMGGGDSTDSSNLPSACDTWQSNPADFCLYSSDSFRLNVACSPSSDLNRILFPEPALKAQNPIQPLPTWNP PSSPPPPPPEAAATAAVKEVKSANTSPPPPSPPVPKPPAGPTVCSNLLEIEPSSPPLLQSLLECARLSESETESAVKSLVKIRVSASEHGNPTERVAYYF SEALYNRLSKQAGESFTMFETTSEEFTLSYKSLNDACPYSKFAHLTANQAILEATETATKIHIVDFGVVQGVQWAALLQALATRSAGKPVLVRISGIPAP ALGSSPAASLFATGKRLLDFAKLLDLNFEFEPILTPIQDLNESCFRVEPDEVLTVNFMLQLFNLLDETTATVETALRMAKSLNPRIVTLGEYEVSLNRIG YLTRFNNALKYYSAVFESLEPSLSRDSTERLEVERMLLGRRIAGVIGPEEPGVVQRERMEDREQWRLLMEKCGFESVALSNYAMSQAKILLWNYNYSPRY SLVESKPGFVSLAWKEVPLLTVSSWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	0	1
AT5G66770	GRAS		GRAS family transcription fact...		Lus10024014 [exp]	1.4	0.8843
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	1.7	0.9122
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10019825 [exp]	3.0	0.8405
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	3.0	0.8816
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	5.7	0.8102
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	7.2	0.8604
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	7.7	0.8542
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	8.1	0.8231
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	13.0	0.8430
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	15.4	0.8464

Compare expression of checked genes

Lus10041740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.