Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17760 243 / 7e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50930 238 / 4e-76 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 230 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 230 / 1e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 225 / 4e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17750 222 / 6e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 221 / 7e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 211 / 2e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 204 / 3e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003213 [exp] 252 / 3e-82 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 243 / 4e-80 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 244 / 2e-79 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10037004 [exp] 237 / 8e-77 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 236 / 1e-76 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 218 / 5e-69 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 216 / 1e-68 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 196 / 2e-60 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10031318 [exp] 196 / 2e-60 AT2G18193 415 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119900 [exp] 250 / 6e-82 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 249 / 2e-81 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 227 / 1e-72 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 225 / 4e-72 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 225 / 5e-72 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 221 / 7e-71 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119066 [exp] 222 / 3e-70 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 218 / 6e-70 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 219 / 1e-69 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.005G119200 [exp] 218 / 4e-69 AT1G43910 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10041777 pacid=23146940 polypeptide=Lus10041777 locus=Lus10041777.g ID=Lus10041777.BGIv1.0 annot-version=v1.0 ATGACTACATGGAGTTCGGTGACAATGGATCACCCTGCGAATTTCGTCTCTCTGGCGATGGAGCTGTCCCTCAAGGAGGCAGTAGTTCGAGATCTCGACA GGTTTCGAAATAGAAAAGACTTTTACAAACAGGTGGGACGCGCTGGGAAGCGTGGCTATTTGCTACACGGCCCGCCCGGGACAGGGAAATCGAGTCTAGT TGCTGCCATGGCTAATTACTTGAAGTTTGATGTCTACAATTTGCAGCTCGCCAGCATCACTAGCGACTCCGAACTCCGACGACTTTTAACTGCCATGGGG AATAGGTCCATCCTCGTCATTGAAGACATTGATTGTAGCTGGGATTTGCCCGATCGGACCACCAACGACAATGTTGATTCAAAAATGAAAAAGGAGGAGA TAACATTGGTGGGGTTGCTGAATTACATCGACGGATTGTGGTTGAGTTGCGGGGACGAGAGGATCATAGTGATCACAACCAACCACAAGGAGAAGCTGGA CCCGGCACTGCTTCGGCCGGGTTGA
AA sequence Show only first row Show all	>Lus10041777 pacid=23146940 polypeptide=Lus10041777 locus=Lus10041777.g ID=Lus10041777.BGIv1.0 annot-version=v1.0 MTTWSSVTMDHPANFVSLAMELSLKEAVVRDLDRFRNRKDFYKQVGRAGKRGYLLHGPPGTGKSSLVAAMANYLKFDVYNLQLASITSDSELRRLLTAMG NRSILVIEDIDCSWDLPDRTTNDNVDSKMKKEEITLVGLLNYIDGLWLSCGDERIIVITTNHKEKLDPALLRPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	0	1
					Lus10003448 [exp]	5.1	0.8017
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	6.9	0.7919
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	9.6	0.7458
AT5G17730			P-loop containing nucleoside t...		Lus10041778 [exp]	10.2	0.6445
					Lus10005203 [exp]	10.6	0.6896
AT1G17930			Aminotransferase-like, plant m...		Lus10021566 [exp]	11.7	0.7412
					Lus10000325 [exp]	13.0	0.7412
					Lus10002099 [exp]	14.3	0.7412
					Lus10011594 [exp]	15.4	0.7412
					Lus10025316 [exp]	16.5	0.7412

Compare expression of checked genes

Lus10041777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.