Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16720 241 / 2e-80 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 239 / 5e-80 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 239 / 2e-79 MYB AtMYB4 myb domain protein 4 (.1) AT4G34990 232 / 1e-76 MYB ATMYB32 myb domain protein 32 (.1) AT1G22640 231 / 2e-76 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 226 / 5e-75 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT5G16770 207 / 6e-66 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 206 / 9e-66 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 205 / 4e-65 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 201 / 3e-64 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028435 [exp] 392 / 1e-140 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10000411 [exp] 239 / 2e-79 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 237 / 1e-78 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 236 / 4e-78 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10009448 [exp] 235 / 9e-78 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10033473 [exp] 227 / 3e-75 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 238 / 1e-73 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10018418 [exp] 204 / 1e-64 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 197 / 3e-63 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G112000 [exp] 251 / 2e-84 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.004G174400 [exp] 239 / 2e-79 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.019G081500 [exp] 238 / 8e-79 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.009G134000 [exp] 237 / 1e-78 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.004G138000 [exp] 237 / 3e-78 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 236 / 7e-78 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 236 / 7e-78 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.013G109300 [exp] 234 / 6e-77 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.010G114000 [exp] 211 / 4e-69 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.017G128900 [exp] 203 / 9e-66 AT4G09460 222 / 6e-73 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041888 pacid=23146875 polypeptide=Lus10041888 locus=Lus10041888.g ID=Lus10041888.BGIv1.0 annot-version=v1.0 ATGGGAAGGTCTCCTTGCTGCGAGAGGGCTCACACAAACAAAGGAGCATGGTCCAGGGAAGAAGACGAGCGCTTAGTTTCCTACATAAAAGCTCATGGTG AAGGCGGCTGGAGATCCCTTCCCAAATCTGCTGGCCTCCTCAGATGTGGGAAAAGCTGCAGGCTTAGGTGGATGAATTACCTTCGACCTGATCTCAAGCG TGGCAATTTCAGTTGCCAGGAGGATGAGCTCATCATCAGACTCCACAGCCTCCTTGGCAATAAGTGGTCTGTGATAGCGGGGAAGTTGCCGGGGCGGACA GACAACGAGATCAAGAACTACTGGAACACGCACCTGAAGAGGAAGCTGCTGGGAGAAGGGATTGACCCTTTGACTCATCGCCAGATCGGAAGTGGAGAAG GAAAGGAAGAAGAAGAAGAAGGCATTGCAGAAGGAAATGGCTCTGTTTTCAGTGAAGAGGTGGTTGAAGGGAATGATAATAGCTCTGGCGTTGGAATGTC GAGGGAAAGAGATGAAGGGACTGACGAGGAATTGAATCTCGAGCTGAGGATGTGCCCTCCGTCTCCTCGTCGGCATGGACCGATGTCGCGGCCATTGGAG GAGGAAGGATCATCAAATGCAGTAATGGTTGAAGGAAGGAAATATTGGCTGGTGGATATGATTAGATAG
AA sequence Show only first row Show all	>Lus10041888 pacid=23146875 polypeptide=Lus10041888 locus=Lus10041888.g ID=Lus10041888.BGIv1.0 annot-version=v1.0 MGRSPCCERAHTNKGAWSREEDERLVSYIKAHGEGGWRSLPKSAGLLRCGKSCRLRWMNYLRPDLKRGNFSCQEDELIIRLHSLLGNKWSVIAGKLPGRT DNEIKNYWNTHLKRKLLGEGIDPLTHRQIGSGEGKEEEEEGIAEGNGSVFSEEVVEGNDNSSGVGMSRERDEGTDEELNLELRMCPPSPRRHGPMSRPLE EEGSSNAVMVEGRKYWLVDMIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	0	1
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	1.4	0.8996
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	2.0	0.8920
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	2.4	0.8944
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	3.7	0.8877
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	3.9	0.8906
					Lus10041394 [exp]	5.1	0.9079
AT3G27050			unknown protein		Lus10032042 [exp]	7.2	0.8565
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	8.5	0.8739
AT3G09860			unknown protein		Lus10023014 [exp]	8.8	0.8891
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	11.8	0.8604

Compare expression of checked genes

Lus10041888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.