Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50930 382 / 7e-126 BCS1 cytochrome BC1 synthesis (.1) AT3G50940 374 / 2e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 345 / 1e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 341 / 4e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 337 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17730 327 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 327 / 3e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 313 / 2e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G43910 310 / 3e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 310 / 1e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028463 [exp] 893 / 0 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 364 / 6e-120 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 350 / 9e-115 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 350 / 2e-114 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 345 / 6e-113 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10007391 [exp] 330 / 8e-107 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003213 [exp] 328 / 1e-105 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 318 / 6e-104 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 307 / 1e-97 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012400 [exp] 614 / 0 AT3G50940 367 / 2e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 379 / 2e-126 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 376 / 9e-125 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.007G020600 [exp] 375 / 3e-124 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119900 [exp] 371 / 9e-123 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020800 [exp] 369 / 1e-121 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G177200 [exp] 363 / 1e-119 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119132 [exp] 362 / 6e-119 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 357 / 3e-118 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 356 / 3e-116 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05278 [flax] [poplar] PEARLI-4 Arabidopsis phospholipase-like protein (PEARLI 4) CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10041918 pacid=23146657 polypeptide=Lus10041918 locus=Lus10041918.g ID=Lus10041918.BGIv1.0 annot-version=v1.0 ATGGGCGCAACACTCTCCGTCCTAGCATCCGTCGCCGTCCTCCGCAGCACAGTCAAAGAGTTCGTCCCGCCAGAAATCCGCACCTACTTACTCCACCTCA CCCGCCGCTTCTCAACGGAGCTCATCTTCGTCATCCAGGAGTCCCACGAAGGCTCCACCAACCACCTCTACAAGGCGCTCACCACCTATCTCGGCAGCGC CGCCGTCTCCACCCCAACCCCCCCGCGGCGGCTCACCGTCGGCAAATCCGAGAGCATGAAGACACTATCCTTCGGCCTCGACCGAAACTCGGAGATCGTC GACTACTTCGACGGCGTCCCGATGCGGTGGGCCTACCACTCGGAGACGAACTCGGCGATCCACTTCGAACTCCGGTGGTTCGAGCTCCGGATTAATAGAA AGTACGGCGAATTGGCGAAGAGCAAGTACATCCCTCACGTCCTTGATTCAGCGAAGAGAATTAGGGATCTGAGCAGGGTGGTGAAGTTCTACAGCACGAA AAGCGGGAGGGACGGGTGGAGCTCGAAAGGGAGGAATCTGGAGCATCCGATGAGCTTCGAGACGCTGGCGATGGACGGAGATCTGAAGCGGAAAGTGATC GACGATCTGGATTCGTTCGTCGGGGCGAGGGATTATTACAGGAAAATCGGGAAAGTCTGGAAAAGAGGGTATTTACTATATGGCCCTCCTGGAACTGGGA AATCCAGCCTGATTGCTGCAATGGCCAATTACTTGAACTTTGATATTTACAATTTGAACCTTTCGGTCGTCAATTCGGACTCTACGCTTGAGCATTTGCT GCTTCACATGTCCAATCGATCGATTCTGGTGGTTGAAGATATCGATTGCTCCGTAATGTTGCAGAATCGTGAAGCCGCCATGGATCCATCTCTTCCAGAG TCGACTCGGAACAATGGTAATCCGACGATGCAAATCCCTCCTCGGCCCAATCAGTTGACACTATCTGGATTGTTGAACGCAATCGACGGACTACTGTCAT GCTGCGGGGACGAGAGGATTGTGGTGTTTACTACTAATTACAAGGACAGGATTGATCCAGCTCTGTTGAGAGCAGGACGTATGGATATGCATATCAACTT AACGTATTGTACATTCTCGACGTTTAAGCAACTCGCCGCTAATTATTTGGAGATTAAGGATCACAATTTGTTTGGACAAGTAGAAAAGTTGATATCAGAA GTTGAGGTGTCTCCAGCCGAGGTTGCAGGAGAGCTTATGAAAGACAGAGATTCCGACACTTGCTTAAGTGGGATCGTCAGGTTTCTCGAAATCAAGAAAG CAGAAGTGAAAGTGAAACCATCTCTGCCGGAAGAAGAAGAAACTCGCGGTGGGGACGAGAGGGGTAACAAGGACGAGAAGGAAGCGAACGGCGTCGTTGA TTGCGATTCAAAGACGGAAGTCGGTGGGTACAAGGTTGCGGAACACTTGGCATCGACGTTGGAATCCGTTCTCGCGGAACACGGAGACATTGGTGCAAAC TGCACATTGCAGACTAAGGATTGTCGATCGCTGTTTCTGGAACTTGTTTGTGAAATGGTGAAGAAGCTGGAAGCGTCAGAAGAGAAGAAGCTAACGAAAG CTGAGGTGGCCTCCATGGGAAACTGTGTTAGAGATATGCAGTCGATGAAATTGGAGGTGGGTTGGCTTAGTGGACGATTGGGTGAGATTAACATTGTTCC CCTGATCTCTAATGGAACCATGAAGATATAA
AA sequence Show only first row Show all	>Lus10041918 pacid=23146657 polypeptide=Lus10041918 locus=Lus10041918.g ID=Lus10041918.BGIv1.0 annot-version=v1.0 MGATLSVLASVAVLRSTVKEFVPPEIRTYLLHLTRRFSTELIFVIQESHEGSTNHLYKALTTYLGSAAVSTPTPPRRLTVGKSESMKTLSFGLDRNSEIV DYFDGVPMRWAYHSETNSAIHFELRWFELRINRKYGELAKSKYIPHVLDSAKRIRDLSRVVKFYSTKSGRDGWSSKGRNLEHPMSFETLAMDGDLKRKVI DDLDSFVGARDYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYLNFDIYNLNLSVVNSDSTLEHLLLHMSNRSILVVEDIDCSVMLQNREAAMDPSLPE STRNNGNPTMQIPPRPNQLTLSGLLNAIDGLLSCCGDERIVVFTTNYKDRIDPALLRAGRMDMHINLTYCTFSTFKQLAANYLEIKDHNLFGQVEKLISE VEVSPAEVAGELMKDRDSDTCLSGIVRFLEIKKAEVKVKPSLPEEEETRGGDERGNKDEKEANGVVDCDSKTEVGGYKVAEHLASTLESVLAEHGDIGAN CTLQTKDCRSLFLELVCEMVKKLEASEEKKLTKAEVASMGNCVRDMQSMKLEVGWLSGRLGEINIVPLISNGTMKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	0	1
					Lus10006569 [exp]	1.4	0.8379
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10013201 [exp]	1.4	0.8649
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	1.7	0.8272
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10040079 [exp]	3.2	0.7957
AT1G70140		ATFH8	formin 8 (.1)		Lus10042154 [exp]	5.7	0.7687
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	8.1	0.7920
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	8.7	0.8040
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	10.8	0.7890
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	11.0	0.7719
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10030751 [exp]	16.4	0.7445

Compare expression of checked genes

Lus10041918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.