Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45000 719 / 0 AAA-type ATPase family protein (.1.2) AT5G43010 717 / 0 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G53750 293 / 6e-96 RPT1A regulatory particle triple-A 1A (.1) AT5G20000 290 / 1e-94 RPT6A AAA-type ATPase family protein (.1) AT5G19990 289 / 2e-94 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT2G20140 285 / 2e-92 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 285 / 2e-92 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 288 / 1e-91 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G58290 265 / 3e-85 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G05530 254 / 1e-80 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017972 [exp] 772 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 740 / 0 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 728 / 0 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10031815 [exp] 295 / 3e-96 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 295 / 7e-95 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 286 / 4e-93 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10015524 [exp] 281 / 3e-92 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 286 / 3e-91 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 276 / 5e-89 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158600 [exp] 733 / 0 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 732 / 0 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 726 / 0 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 725 / 0 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.018G056600 [exp] 294 / 4e-96 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 294 / 4e-96 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 293 / 9e-96 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.002G252600 [exp] 286 / 8e-93 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 286 / 1e-92 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.008G144100 [exp] 285 / 1e-92 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10041964 pacid=23153702 polypeptide=Lus10041964 locus=Lus10041964.g ID=Lus10041964.BGIv1.0 annot-version=v1.0 ATGTCTACCACTGAAGGCGAAGAAGCCGGAAGGCGCCGTACTGCGGTCGCCGAGTATCGGAAGAAACTCCTTCAGCAGAGGGAACTTGAATCAAGAAGTC GCGCAGCCAAGGACAGTTTGCGGGTTTCGAAGAAGGAATTTGCGAAAACCGAGGATGACCTAAAGTCATTACAGAGTGTTGGACAGATCATTGGCGAAGT ACTTAGGCCACTTGACAATGAACGTATGATAGTTAAAGCAAGCAGCGGTCCGAGATATGTGGTTGGCTGCCGCAGCAAAGTGGACAAAGAAAAGCTGACT GCTGGAACTCGCGTTGTTCTCGATATGACTACTCTGACGATAATGAGGGCTCTTCCCCGAGAAGTTGATCCAGTTGTATACAACATGCTCCATGAAGACC CCGGTAATATTAGCTACTCTGCTGTTGGAGGGTTGTCGGATCAGATTCGGGAGCTCCGAGAATCCATAGAACTCCCTCTCATGAATCCTGAACTCTTTCT GAGAGTGGGGATTAAGCCTCCAAAGGGTGTTCTCCTTTACGGACCTCCAGGAACTGGGAAAACATTGGGAACCGGGAAAACATTGTTAGCCAGGGCAATC GCGAGCAACATCGATGCCAACTTCCTAAAGGTTGTATCTAGTGCTATAATCGACAAGTACATTGGTGAAAGCGCGAGGTTGATTCGAGAAATGTTTAATT ACGCTCGCGATCATCAACCATGCATCATATTTATGGACGAGATTGATGCCATTGGTGGACGACGTTTCAGCGAAGGGACGAGCGCTGATCGTGAAATTCA ACGAACTCTCATGGAGTTGCTTAATCAATTAGATGGATTTGACCAGCTCGGCAAGGTTAAAATGATCATGGCAACCAACAGACCGGATGTTCTGGATCCG GCTCTTCTTCGCCCGGGCCGTTTAGACAGGAAGATCGAGATTCCATTGCCGAATGAGCAGTCTAGGATGGAGATTCTCAAAATTCATGCTGCTGGCATTG CCAAACACGGAGAAATCGACTATGAAGCGGTTGTGAAACTAGCTGAGGGTTTCAATGGCGCTGATCTTCGTAATGTATGTACCGAAGCCGGCATGTCTGC CATCCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGCTGTCAGAAAGTTGAACGAAGCGAAGAAACTCGAATCAAGTTCTCACTACAAT GCCGATTTCGGGAAGGAATGA
AA sequence Show only first row Show all	>Lus10041964 pacid=23153702 polypeptide=Lus10041964 locus=Lus10041964.g ID=Lus10041964.BGIv1.0 annot-version=v1.0 MSTTEGEEAGRRRTAVAEYRKKLLQQRELESRSRAAKDSLRVSKKEFAKTEDDLKSLQSVGQIIGEVLRPLDNERMIVKASSGPRYVVGCRSKVDKEKLT AGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLGTGKTLLARAI ASNIDANFLKVVSSAIIDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYN ADFGKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45000			AAA-type ATPase family protein...		Lus10041964 [exp]	0	1
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	3.5	0.9062
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	4.2	0.9078
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	6.7	0.9001
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	12.7	0.8888
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10037531 [exp]	13.0	0.8800
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	15.3	0.8828
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	16.0	0.8892
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	16.5	0.8834
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	18.4	0.8986
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	19.3	0.8972

Compare expression of checked genes

Lus10041964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.