Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03670 724 / 0 CDC48B cell division cycle 48B (.1) AT5G03340 358 / 1e-112 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 356 / 7e-112 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 343 / 7e-107 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 274 / 7e-81 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT3G56690 251 / 2e-71 CIP111 Cam interacting protein 111 (.1) AT5G08470 202 / 2e-54 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G05530 181 / 3e-50 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 177 / 1e-48 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT5G19990 175 / 3e-48 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018033 [exp] 1067 / 0 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10021441 [exp] 352 / 4e-110 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 349 / 3e-109 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 344 / 4e-107 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 343 / 7e-107 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 338 / 4e-105 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 306 / 3e-93 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 298 / 1e-92 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 306 / 1e-90 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128700 [exp] 807 / 0 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.017G108200 [exp] 364 / 6e-115 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 362 / 5e-114 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 360 / 2e-113 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 360 / 3e-113 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 358 / 2e-112 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 258 / 6e-75 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G035000 [exp] 242 / 4e-68 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G174100 [exp] 199 / 2e-53 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.013G016800 [exp] 181 / 2e-50 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10042029 pacid=23153473 polypeptide=Lus10042029 locus=Lus10042029.g ID=Lus10042029.BGIv1.0 annot-version=v1.0 ATGGGCCATACAATATTTGTCAAAGCCCCGAATTCAGAAAGCCCAAGTCATAAAGAAACAGCAGAGAACGAAATTAACCTCGGACAGAAGAAGCCTTCCG TCTCGTCTTCCACGGCGGCCGGCGACTTGAACGTGGCAGAGGGAAGTTCGTCACGTTTTGAAGTTTTTGGTCCCTCCTTCTTTCTTTCGATGGAAGCTGA AAGCAGCAGCAGCAGCTTGAGCTGCACCAATATTGCTGACACTGACCCCTCCAAATTCGGAGAGAAGAAGAGATGGAGAGCTGAAGAAGCAATTGCAGGA AATACAGCAGCACTCGATTCCCTTAGAGAACTCATCGTGTTCCCTCTTCTCTATTCTCCTCAAGCTCGAAAGCTCGGCCTTAAGTGGCCAACGGGGCTGC TTTTGTACGGTCCACCAGGAACTGGAAAGACGAGTCTTGTTCGTGCAGTGGTTCAGGAATCCGGTGCACATTTAGTTGTTATTAGCCCACATTCTGTTCA CCGAGCACATGCTGGGGAAAGCGAAAGGATTTTGAGAGAGGCATTTGCTGATGCATCGTCAAATACGATTGCAGGGAAACCATCAGTTGTGTTTATAGAT GAAATCGATGCAATGTGTCCTCGTCGTGATTCTAGGAGAGAACAAAATGTTCGTATAGTTTCTCAACTCTGCGCGTTGATGGATGCCATGAAGCCTTCTT CTGTTTCTTCAGCGCATGTTGTTGTGGTTGCATCAACCAACAGAGTTGATGCAGTTGATTCTGCACTTAGAAGGTCTGGGCGTTTTGATAATGAAATAGA AGTGACAACACCTACAGAAGAGGAACGTTTGCAGATCCTCAAGCTATATACAAAGAAGTTACCATTGGATAGGGATGTCGACTTGCATTCTGTTGCTGCT TCATGTAATGGATATGTTGGGGCTGACCTGGAAGCTTTGTGTCGCGAAGCCACTATGTCAGCCATTAAGTCAGCTGATGCCAGAGGAGTTGCTGCTCCTC TTTGGTTAAGAACAGAAGATTGGAAGCATGCAAGGTCGGTTGTTGGTCCTAGCATAACACGAGGTGTGACAGTTGAAATACCAAAAGTGTCCTGGGAAGA TATTGGTGGACTGAAGGATTTGAAGAAAAAACTCCAACAAGCAGTTGAGTGGCCTATTAAACATCAGTCCGCATTTTCAAGAATGGGAATTTCTCCCATA CGTGGGGTCCTTTTGCATGGACCTCCTGGATGTTCCAAAACAACTCTTGCTAAAGCTGCAGCTAATGCTGCTCAAGCTTCTTTCTTTTCATTGAGTGGTG CAGAATTATTTTCAATGTATGTTGGAGAGGGTGAAGCATTATTGCGCAACACATTCCAAAGAGCTCGTGTAGCAGCTCCCAGTATAATCTTCTTCGATGA AGCTGATGTCGTGGCTGGTAAACGAGGTGACAGTTCAAGTAATTCATCCACTGTAGGGGAGAGGCTTTTATCTACTCTACTGACTGAAATGGATGGTCTG CAACAAGCAAAAGGTATCCTTGTGCTGGCGGCCACCAATCGTCCACAAGCAATAGATGCTGCACTGATGCGCCCTGGACGTTTTGACTTGGTATTGTATG TGCCACCCCCTGATAAGGAGGCTCGTCTTGAGATCCTCGATGTCCATACACGAAACATGAGCGTGGGGGATGATGTTAACCTTAAAACTATAGCGGAGAA TACTGAGCTGTTCACAGGTGCTGAGCTAGAAGGTCTTTGTCGCGAAGCTGGAATTGTAGCTCTGAGAGAAGATATATCTGCCAATGTCGTCAGCAACAAA CATTTTCAGGCAGTGTTGGAATCTCTGAAACCAGCACTAACCATAGAGGATATAGAAGAGTACTCGCGGTTCATGAAGACACAGCATATCAGATTGCCTA GCAAGACCGGAGAATCAGCCATTGTCAATAACAGCAGCGCCAAAACATTTTGGCGGATGGATTCAAAGTTGACTGTGATTAAAGTTGGGGTTTTGAGTGT ATTGGTTTTAGCTACTGCAAAATATCTTCACTTTTATACAGAGTCAGCCCGAGCAGATGTATCAGTTAGGTACTCTCCTACTTAA
AA sequence Show only first row Show all	>Lus10042029 pacid=23153473 polypeptide=Lus10042029 locus=Lus10042029.g ID=Lus10042029.BGIv1.0 annot-version=v1.0 MGHTIFVKAPNSESPSHKETAENEINLGQKKPSVSSSTAAGDLNVAEGSSSRFEVFGPSFFLSMEAESSSSSLSCTNIADTDPSKFGEKKRWRAEEAIAG NTAALDSLRELIVFPLLYSPQARKLGLKWPTGLLLYGPPGTGKTSLVRAVVQESGAHLVVISPHSVHRAHAGESERILREAFADASSNTIAGKPSVVFID EIDAMCPRRDSRREQNVRIVSQLCALMDAMKPSSVSSAHVVVVASTNRVDAVDSALRRSGRFDNEIEVTTPTEEERLQILKLYTKKLPLDRDVDLHSVAA SCNGYVGADLEALCREATMSAIKSADARGVAAPLWLRTEDWKHARSVVGPSITRGVTVEIPKVSWEDIGGLKDLKKKLQQAVEWPIKHQSAFSRMGISPI RGVLLHGPPGCSKTTLAKAAANAAQASFFSLSGAELFSMYVGEGEALLRNTFQRARVAAPSIIFFDEADVVAGKRGDSSSNSSTVGERLLSTLLTEMDGL QQAKGILVLAATNRPQAIDAALMRPGRFDLVLYVPPPDKEARLEILDVHTRNMSVGDDVNLKTIAENTELFTGAELEGLCREAGIVALREDISANVVSNK HFQAVLESLKPALTIEDIEEYSRFMKTQHIRLPSKTGESAIVNNSSAKTFWRMDSKLTVIKVGVLSVLVLATAKYLHFYTESARADVSVRYSPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	0	1
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	2.2	0.9053
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	3.0	0.8927
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	4.6	0.9073
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	4.6	0.8948
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	4.6	0.9111
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	6.2	0.8717
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	6.6	0.8875
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10043172 [exp]	6.9	0.8513
AT5G38720			unknown protein		Lus10023232 [exp]	6.9	0.8929
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	6.9	0.8689

Compare expression of checked genes

Lus10042029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.