Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20990 312 / 2e-106 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08080 286 / 3e-96 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 256 / 4e-84 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT4G21000 244 / 8e-80 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT2G28210 236 / 2e-77 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G04180 226 / 1e-72 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT3G52720 190 / 2e-58 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT5G56330 178 / 4e-53 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1) AT4G30330 124 / 2e-35 Small nuclear ribonucleoprotein family protein (.1) AT2G18740 123 / 5e-35 Small nuclear ribonucleoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018034 [exp] 566 / 0 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021455 [exp] 303 / 2e-102 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 294 / 4e-99 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 288 / 1e-96 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10014412 [exp] 281 / 6e-94 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10023915 [exp] 281 / 9e-94 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018017 [exp] 281 / 6e-93 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10042013 [exp] 265 / 2e-87 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021454 [exp] 264 / 2e-87 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043700 [exp] 378 / 5e-132 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 365 / 3e-127 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.009G010200 [exp] 310 / 1e-105 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 310 / 2e-105 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G047500 [exp] 295 / 3e-99 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G121900 [exp] 290 / 2e-97 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G079600 [exp] 197 / 3e-61 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 193 / 1e-59 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.018G096200 [exp] 131 / 4e-38 AT4G30330 166 / 3e-55 Small nuclear ribonucleoprotein family protein (.1) Potri.006G174000 [exp] 131 / 4e-38 AT4G30330 166 / 3e-55 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10042030 pacid=23153794 polypeptide=Lus10042030 locus=Lus10042030.g ID=Lus10042030.BGIv1.0 annot-version=v1.0 ATGGCGAGCACCAAGGTTCAAAGGATTATGACCCAACCCATTAAAGCTCGTATCCAGATTTGGCTGTTCGAGCAGAAGGATCTGAGAATTGAAGGCCGAA TTATCGGTTTTGATGAGTACATGAACTTGGTCTTGGATGATGCCGAAGAGGTCAATGTCAAGAAGAAGAGCAGAAAGTCTCTAGGGAGGATTCTTCTGAA AGGAGACAACATCACCCTGATGATGAACACCATTACAACAATGAAGAAGTTACTGGCCACCCTCTTCCTTCTCTATGTCACATTCTCTGCTGCTTCTTCT GACCATGGCGAAGTTGATGATGAGTCAGCATTCGCTTACGAAGAAAGAAGTGGGAAAGGGCCAAGCAGATGGGGAGCGATTGACCCACATTGGCAAGTGT GTAAGAACGGGAGCTTACAGTCTCCAATTGATCTGCTGGATACAAGGGTGGAGGTCCTTTCCAATCTGGGGAAGCTGAACAGAGATTACAAACCAGCTCC TGCCTCTGTCAGGAACAGGGGACATGACGTTACAGTGTTCTGGAAAGGAGATGCAGGGGAGATCAAGATCAACGGCAGTCAATACAAGCTGGTGCAATGT CACTGGCATTCTCCATCTGAGCACACTTTCAATGGTTCAAGGTACGAGCTGGAGCTTCACTTGGTGCATAAAAGCTATGAAGGGAATCTGGCGGTGGTTG CAATAGTCTATAAATACGGGCGCCCTGACCGAATCCTGTCCAAGTTGTTCCATCACATAAGGTCAGTGGACAGAAAGAAGGAGAAGGATTTGGGAATAAT GAACCCAGGAGATATCAAGGTTGGGAGCAGGAAGTATTACAGATATATTGGTTCTCTCACTGTTCCTCCATGCACTGAAGGCGTTATCTGGACCATTGTC AAAAAGGTTAGGACAGTCTCGAGGGAGCAAGTTAGAGCCTTAAGGGAAGCAGTTCATGATGGATTTGAAGCGAATGCAAGGCCAATTCAACCGTTGGATG GAAGGCCAGTGTACCAGTACGGTCCATAA
AA sequence Show only first row Show all	>Lus10042030 pacid=23153794 polypeptide=Lus10042030 locus=Lus10042030.g ID=Lus10042030.BGIv1.0 annot-version=v1.0 MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKSLGRILLKGDNITLMMNTITTMKKLLATLFLLYVTFSAASS DHGEVDDESAFAYEERSGKGPSRWGAIDPHWQVCKNGSLQSPIDLLDTRVEVLSNLGKLNRDYKPAPASVRNRGHDVTVFWKGDAGEIKINGSQYKLVQC HWHSPSEHTFNGSRYELELHLVHKSYEGNLAVVAIVYKYGRPDRILSKLFHHIRSVDRKKEKDLGIMNPGDIKVGSRKYYRYIGSLTVPPCTEGVIWTIV KKVRTVSREQVRALREAVHDGFEANARPIQPLDGRPVYQYGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10042030 [exp]	0	1
AT1G50910			unknown protein		Lus10043058 [exp]	9.3	0.7674
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	21.7	0.7638
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	31.2	0.6399
					Lus10019128 [exp]	31.6	0.6975
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10000415 [exp]	33.6	0.6144
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	38.7	0.6379
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	39.1	0.6726
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	42.4	0.6945
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	48.8	0.6930
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	50.8	0.6812

Compare expression of checked genes

Lus10042030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.