Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10290 501 / 7e-180 Nucleotide-sugar transporter family protein (.1) AT5G04160 499 / 1e-179 Nucleotide-sugar transporter family protein (.1) AT3G11320 431 / 6e-153 Nucleotide-sugar transporter family protein (.1) AT5G05820 425 / 2e-150 Nucleotide-sugar transporter family protein (.1) AT1G12500 339 / 7e-116 Nucleotide-sugar transporter family protein (.1) AT1G77610 149 / 4e-42 EamA-like transporter family protein (.1) AT1G21870 146 / 5e-41 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G25400 118 / 1e-30 Nucleotide-sugar transporter family protein (.1) AT5G11230 116 / 1e-29 Nucleotide-sugar transporter family protein (.1) AT2G25520 107 / 2e-26 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018043 [exp] 573 / 0 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 425 / 2e-150 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 414 / 3e-146 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 413 / 9e-146 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 412 / 2e-145 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 407 / 6e-143 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 298 / 4e-101 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 282 / 4e-94 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 158 / 1e-45 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043200 [exp] 527 / 0 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 510 / 0 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 436 / 4e-155 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 436 / 7e-155 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 429 / 3e-152 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 409 / 4e-144 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 362 / 4e-125 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 348 / 1e-119 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 151 / 6e-43 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 145 / 1e-40 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10042039 pacid=23153725 polypeptide=Lus10042039 locus=Lus10042039.g ID=Lus10042039.BGIv1.0 annot-version=v1.0 ATGGCGGCACAATCATCAAATTCATCCTCCTCCTCCATTTCTCCATCCTCGTCGAGGAAACAAGCCGTATTCATAGTGTCCCTGGTGACCCTATGGTACT CGTCGAACATCGGAGTGCTCCTCCTGAACAAGTACCTCCTCTCCAATTACGGATTCAGATTCCCAATCTTCCTCACAATGTGCCACATGTCCGCCTGCGC AATTCTCTCCTACCTCTCCATCGTCTTCCTCAAGGTCGTCCCTCTCCAGACCTTGAAATCTCGACCTCAGCTCCTCAAGATCTCAACGCTCAGCGTCGTC TTCTGCGCCTCCGTCGTCGGCGGCAATGTCTCCCTCCGCTACCTCCCCGTCTCTTTCAATCAGGCCGTCGGAGCTACCACCCCGTTCTTCACCGCCGTCT TTGCCTACTTGATGACCTTCAAGCGGGAAGCCTGGGTCGTTTACTGCGCCCTCGTTCCCGTCGTTGTCGGCGTCGTCATCGCCAGCGGGGGTGAGCCAGG ATTTCACTTGTTTGGATTCATCATGTGCATTAGCGCAACTGCTGCGAGGGCTTTCAAGTCGGTTCTTCAAGGCATTCTGCTTTCTTCAGACGGAGAGAAA TTGAATTCGATGAACTTGCTACTCTACATGTCACCGATTGCAGTTTTCGTGCTAGTGCCCGCAGTAATCGTGATGGAGCCTGATGTACTGAGTATCACCT TGTCACTTGGAAGGAAAGACAAGTTCTTGTGGTTGCTACTTATACTCAATTCCACGCTGGCCTATTCCGCCAACTTAACAAACTTCTTGGTCACTAAGCA TACGAGTGCATTAACCCTCCAGGTGCTGGGGAACGCAAAAGGCGCTGTAGCTGTCGTAATCTCGATATTCATATTCAGGAACCCGGTCACAGTCGTCGGA ATCGGTGGATACACCATTACAGTCCTCGGTGTGGTTGCTTATGGAGAGGCCAAGAGAAGGTTTAGATGA
AA sequence Show only first row Show all	>Lus10042039 pacid=23153725 polypeptide=Lus10042039 locus=Lus10042039.g ID=Lus10042039.BGIv1.0 annot-version=v1.0 MAAQSSNSSSSSISPSSSRKQAVFIVSLVTLWYSSNIGVLLLNKYLLSNYGFRFPIFLTMCHMSACAILSYLSIVFLKVVPLQTLKSRPQLLKISTLSVV FCASVVGGNVSLRYLPVSFNQAVGATTPFFTAVFAYLMTFKREAWVVYCALVPVVVGVVIASGGEPGFHLFGFIMCISATAARAFKSVLQGILLSSDGEK LNSMNLLLYMSPIAVFVLVPAVIVMEPDVLSITLSLGRKDKFLWLLLILNSTLAYSANLTNFLVTKHTSALTLQVLGNAKGAVAVVISIFIFRNPVTVVG IGGYTITVLGVVAYGEAKRRFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	0	1
AT3G46520		ACT12	actin-12 (.1)		Lus10016259 [exp]	1.4	0.9113
AT3G28720			unknown protein		Lus10033020 [exp]	1.7	0.9125
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	4.2	0.8806
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	4.9	0.8902
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	6.9	0.8649
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	8.5	0.8795
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	9.4	0.8874
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	11.2	0.8848
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	13.2	0.8166
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	13.5	0.8801

Compare expression of checked genes

Lus10042039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.