Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50130 437 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 328 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 278 / 2e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 255 / 7e-83 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 251 / 1e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 249 / 2e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 242 / 6e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 236 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 94 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 90 / 9e-20 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018092 [exp] 504 / 4e-180 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003204 [exp] 315 / 3e-106 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017308 [exp] 295 / 3e-98 AT4G24050 495 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 256 / 5e-83 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 254 / 1e-82 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 253 / 4e-82 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 253 / 6e-82 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 250 / 7e-81 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024649 [exp] 249 / 8e-81 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081102 [exp] 443 / 1e-156 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 443 / 1e-156 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 424 / 3e-149 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G086900 [exp] 298 / 3e-99 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G144100 [exp] 273 / 2e-89 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 260 / 5e-85 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 255 / 5e-83 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 254 / 1e-82 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 249 / 8e-81 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 234 / 1e-74 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042088 pacid=23153684 polypeptide=Lus10042088 locus=Lus10042088.g ID=Lus10042088.BGIv1.0 annot-version=v1.0 ATGAAGGCAACAGTGAAGTACTTGGCAGGCATTGCAGGGCCAAGTGGGTATGGCTCCAAATCTACAGCTGACCAAGTCACTGAACATATCCACCTTCCAT CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCATCTCCTTTAACAGCCATCATCACTGGGGCAACGTCAGGGATAGGAGTGGAGACAGCAAG AGCGTTGGCAAAGAGAGGAGTAAGAGTGGTGATAGCAGCAAGAGACATCAACAGAGGTTCCAAAGTGAAAGAAGCAATCCAGAATGAAGCTCCAGAGACT GACATAATAGTGTTGGAGCTTGATTTGAGCTCTTTTGCATCCATCTCAGCTTTCTCCCACCACTTCCTTTCTCTTGGCCTTCCACTTCACATCCTCATAA ACAATGCAGGGATTTTCTCTCACAATTTGGAGTTCTCTGAGGACAAAGTTGAGATGACTTTTGCCACTAATTACTTGGGGCATTTCTTGCTGACAGAGTT GTTGATGGAGAAGATGATAGAAACAGCAGAAGAGAGTGGGATGCATGGCAGAATCATCAATCTTTCATCAGCGATTCACAGCTGGGTGAAGAAGGAATCT TTCTCCTTCCAAAAGATGATAAACCCAGCAGCAGCAGCAGCAAAGTATAATGGGACACGTGCATATGCTCAGACAAAGCTGGCTGCCATTTTGCATGCCA AGGAACTCTCCCGACAGCTCAAGGCAAGAAATGCAAAAGTGACAGTTAATGCTGTACATCCAGGCATTATTAAAACTGGCATCATCAGAGCCCACAAGGG ATTCCTCACAGATTCAGTATACTTCATTGCCTCCAAGCTGCTGAAATCTGTACCGCAGGGAGCATCAACCACATGCTATGTAGCACTGAGTCCAAAAACA GAAGGAGTGCGGGGGAAATACTTTGCAGACTGCAATGAGAGCAACTGTTCATCGTTAGGGAATGACGATGCTGAAGCACTCAAGCTCTGTCACCTTACTC GTGCATTTATCCGCAGAAGGTTGTTATTGCAGCAGCAGGCCACCACCGCTACTACTCAAACTAAAACTAAAACAACTACCTCAAGATCATGA
AA sequence Show only first row Show all	>Lus10042088 pacid=23153684 polypeptide=Lus10042088 locus=Lus10042088.g ID=Lus10042088.BGIv1.0 annot-version=v1.0 MKATVKYLAGIAGPSGYGSKSTADQVTEHIHLPSSSSSSSSSSSSSSSPLTAIITGATSGIGVETARALAKRGVRVVIAARDINRGSKVKEAIQNEAPET DIIVLELDLSSFASISAFSHHFLSLGLPLHILINNAGIFSHNLEFSEDKVEMTFATNYLGHFLLTELLMEKMIETAEESGMHGRIINLSSAIHSWVKKES FSFQKMINPAAAAAKYNGTRAYAQTKLAAILHAKELSRQLKARNAKVTVNAVHPGIIKTGIIRAHKGFLTDSVYFIASKLLKSVPQGASTTCYVALSPKT EGVRGKYFADCNESNCSSLGNDDAEALKLCHLTRAFIRRRLLLQQQATTATTQTKTKTTTSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	3.5	0.9171
AT5G42710			unknown protein		Lus10016315 [exp]	4.0	0.9420
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	4.0	0.9152
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	4.2	0.9334
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10043387 [exp]	4.5	0.8945
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	5.5	0.9401
AT4G36210			Protein of unknown function (D...		Lus10024307 [exp]	6.2	0.8769
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	11.7	0.8798
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	12.0	0.9137
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	14.8	0.9282

Compare expression of checked genes

Lus10042088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.