Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33320 513 / 0 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT3G01550 382 / 5e-131 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G17630 225 / 1e-69 Nucleotide/sugar transporter family protein (.1) AT5G54800 217 / 1e-66 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 214 / 2e-65 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT1G61800 213 / 5e-65 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT4G03950 94 / 9e-22 Nucleotide/sugar transporter family protein (.1) AT1G21870 86 / 2e-18 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 80 / 2e-16 EamA-like transporter family protein (.1) AT1G43310 68 / 3e-14 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002385 [exp] 691 / 0 AT5G33320 485 / 2e-171 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10013083 [exp] 437 / 1e-152 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10022257 [exp] 270 / 2e-88 AT3G01550 264 / 1e-87 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10011155 [exp] 213 / 5e-65 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 213 / 9e-65 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10004312 [exp] 212 / 1e-64 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10018356 [exp] 209 / 6e-64 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10019209 [exp] 209 / 2e-63 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10007653 [exp] 207 / 6e-63 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077900 [exp] 596 / 0 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 577 / 0 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 444 / 5e-155 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.013G071900 [exp] 224 / 7e-69 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G420200 [exp] 213 / 4e-65 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 212 / 9e-65 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 210 / 5e-64 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G057800 [exp] 204 / 1e-61 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 199 / 1e-59 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 196 / 1e-59 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10042110 pacid=23153743 polypeptide=Lus10042110 locus=Lus10042110.g ID=Lus10042110.BGIv1.0 annot-version=v1.0 ATGCAGAGCGCCGCCTTCACCGCCTCCCCTTCCCTTTTCCGTCCGATTCGGACTCCGGCCTCCAACCCTAGGCTAGGACTCCGATTTGACCCTATTCGAG CTGCTCGTGAAGATCTCGACACTTCCGGCAATGTCATCTTCCCCCGCCGATCCTGGTCCCTTGCCTCCTCCTCCGCGTCTCCCAAGCTTCAGCTCAGGCC GTGGAACCCCTTGCCTTCCGAGAAGAGATTCGACTTGAAGGCAACCTCCTCCTCTGCCGAGAACGCTGGCGAGACGGAGGAGAACAAGGCTGCTGCTTTG ACTAAGACTTTGGTGCTTGGATCGTTGTTTGGACTCTGGTATTTGTTCAACATCTACTTCAACATTTACAACAAGCAGGTCTTGAAAGTCTACCCTAATC CCATAACAGTTACTGCGGTTCAGTTTGCTGTGGGTACTGTTCTTGTTACTTTCATGTGGACTTTCAACCTTTACAAGAGGCCAAAGATCAGTTGGGCTAT GCTTGGTGCAATCCTGCCGCTTGCGATGGTCCACACTCTTGGTAATCTCTTCACTAACATGAGTCTTGGCAAAGTGGCTGTTTCCTTCACTCACACTATC AAGGCCATGGAACCCTTCTTCTCGGTTCTTCTCTCTGCAATGTTCCTTGGCGAGTTCCCTAGTCTTTGGGTGGTTTCTTCTCTTTTACCAATTGTCGGTG GAGTAGCACTGGCATCTATGACTGAAGCCTCTTTCAACTGGGCTGGTTTCTGGACTGCAATGGCTTCTAATGTGACAAACCAGTCTCGTAATGTCCTAAG CAAAAAAGTCATGGTTAAGAAAGAGGATTCTATGGACAACATCACGCTCTTCTCAATCATTACAATCATGTCATTTTTCTTGCTTGCTCCCGTTGCTATC TTCATGGAAGGTGTCAAGTTCACACCAGCGTACCTCCAATCTGCTGGATTGAATGTTAAACAAGTGTACACTAGGTCGTTGATTGCTGCTCTATGTTTCC ACGCCTACCAGCAGGTATCCTATATGATACTGCAGAGAGTATCACCAGTGACCCACTCAGTTGGCAATTGCGTTAAGCGTGTGGTGGTTATTGTAAGCTC CGTCATCTTCTTCCAGACGCCTGTTTCACCAGTCAACTCTCTAGGAACCGGGATAGCACTAGCTGGAGTTTTCCTGTACTCAAGAGTGAAGCGCATCAAG CCAAAGACCAAGGAAGCTTAG
AA sequence Show only first row Show all	>Lus10042110 pacid=23153743 polypeptide=Lus10042110 locus=Lus10042110.g ID=Lus10042110.BGIv1.0 annot-version=v1.0 MQSAAFTASPSLFRPIRTPASNPRLGLRFDPIRAAREDLDTSGNVIFPRRSWSLASSSASPKLQLRPWNPLPSEKRFDLKATSSSAENAGETEENKAAAL TKTLVLGSLFGLWYLFNIYFNIYNKQVLKVYPNPITVTAVQFAVGTVLVTFMWTFNLYKRPKISWAMLGAILPLAMVHTLGNLFTNMSLGKVAVSFTHTI KAMEPFFSVLLSAMFLGEFPSLWVVSSLLPIVGGVALASMTEASFNWAGFWTAMASNVTNQSRNVLSKKVMVKKEDSMDNITLFSIITIMSFFLLAPVAI FMEGVKFTPAYLQSAGLNVKQVYTRSLIAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNSLGTGIALAGVFLYSRVKRIK PKTKEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	0	1
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	1.7	0.9356
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	2.8	0.9292
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	3.9	0.9257
AT2G16800			high-affinity nickel-transport...		Lus10027851 [exp]	6.3	0.9061
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	6.7	0.9197
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	7.0	0.9154
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	8.1	0.9196
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	8.1	0.9047
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	10.6	0.9225
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	12.6	0.9129

Compare expression of checked genes

Lus10042110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.