Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18770 246 / 2e-77 MYB ATMYB98 myb domain protein 98 (.1) AT5G58850 192 / 8e-57 MYB ATMYB119 myb domain protein 119 (.1) AT3G27785 191 / 4e-56 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G11050 188 / 4e-55 MYB ATMYB64 myb domain protein 64 (.1) AT5G40360 175 / 5e-51 MYB ATMYB115 myb domain protein 115 (.1) AT3G09370 153 / 2e-41 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 151 / 1e-40 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 145 / 8e-38 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G32730 143 / 5e-37 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G40430 128 / 2e-34 MYB ATMYB22 myb domain protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002384 [exp] 619 / 0 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10027695 [exp] 303 / 3e-98 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10039966 [exp] 289 / 3e-94 AT4G18770 256 / 2e-81 myb domain protein 98 (.1) Lus10018220 [exp] 185 / 2e-54 AT5G58850 257 / 7e-82 myb domain protein 119 (.1) Lus10040684 [exp] 181 / 3e-53 AT5G58850 261 / 5e-84 myb domain protein 119 (.1) Lus10005864 [exp] 181 / 8e-53 AT5G58850 209 / 3e-63 myb domain protein 119 (.1) Lus10013084 [exp] 171 / 2e-49 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10022256 [exp] 169 / 3e-48 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10025351 [exp] 152 / 4e-41 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077700 [exp] 273 / 6e-88 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.012G082000 [exp] 271 / 9e-87 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.005G118500 [exp] 249 / 1e-78 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 213 / 2e-64 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G044100 [exp] 189 / 7e-55 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.001G250000 [exp] 187 / 2e-54 AT5G58850 221 / 7e-67 myb domain protein 119 (.1) Potri.006G085600 [exp] 154 / 1e-41 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 148 / 2e-38 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 147 / 3e-38 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 141 / 6e-37 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042111 pacid=23153734 polypeptide=Lus10042111 locus=Lus10042111.g ID=Lus10042111.BGIv1.0 annot-version=v1.0 ATGGAGCATGAAACTGACGCTTTTGTCTCCTCCCAGGCGCTGTTTCTGCCTCAGAATAATTATAACATGACCACCCTGAGCCGCCGCCACCACCAACACC CCCGCCCCCACCAACACCCGCCGCCGAATTTTCCGGCGCGGCCGTTGCAGCTGCAGTCAACGGGGCTTCCTCAGGAGGAGGATCACTTGTTTGGACAAAA TGGATCATCGACAAATCAAGTGTTTGGAGTCAACAACACATGGTCCAATTTGGATTCTTATGATGTTTACTCGTATGGATCATCCTCTTCAAACAATTAT GAGTATGAGTGTAAGCCTTTTGCTAATATCAATGGTGAGAAATTCAGTAATCAGATGGTGAATATGGTTGCTGCTCCAGTGGCCAAAAACACTTGGAAAG GTAAGAAGAATGTGGTGAAGGGCCAATGGACAGTCGATGAGGACAGGTTGCTAGTTCAGCTCGTGGGACAATATGGGACTAAAAAATGGTCATACATCGC TCAGATGCTGCCTGGGAGAATTGGAAAGCAGTGTCGAGAGAGGTGGCACAACCATCTCAAACCTGATATTAAGAAAGATACATGGACAGAAGATGAGGAC AAAGTGCTAATACATTCACATATAGAGATTGGGAACAAATGGGCAGAGATTGCCAAGAGGCTCCCTGGAAGAACAGAGAACTCAATCAAGAACCACTGGA ATGCAACCAAAAGGAAGCAATACTCCAAGCGCAAATGCCGCTCTTCCAAGTACCCTCGAACTTCCATTCTCCAGGACTACATCAAGAGCTTGAACTTGGT CAACTCTACTTCCACCAAAAGATCATCCTCCTCCAAGAACAACACTACTACTACTACTGCTGCTGCTGCTGCTTCCAACGCCATTATTCCAGCAGCACCT CTGGTCTCAGCTCGTCGTCCGGAGCATAACAACTCACAGTCTCTCCTCCATCCACAACTGAGCATGGATCACTTGTATGAGGAAAATGACCGGTTGGTAC CCAATTTCGATTTCATGAGTAATGAAGAAGTCCCTGATTTTGGATTTGATGATGAGATATTTCAAGATAGATGCAGCATTGACTCCTTTCTTGACGGGTT GTCTTCTTGTGAACTACTGGTTGATGAGAAGAGCTTCAACAAGTCCGTCGAGGATGCAATGCTGCCGATGCCTTTCGAGGTGAAGAAGGAGATGGATTTG GTCGAGATGATGAATTTACAGGGACAGGCCCTTTGA
AA sequence Show only first row Show all	>Lus10042111 pacid=23153734 polypeptide=Lus10042111 locus=Lus10042111.g ID=Lus10042111.BGIv1.0 annot-version=v1.0 MEHETDAFVSSQALFLPQNNYNMTTLSRRHHQHPRPHQHPPPNFPARPLQLQSTGLPQEEDHLFGQNGSSTNQVFGVNNTWSNLDSYDVYSYGSSSSNNY EYECKPFANINGEKFSNQMVNMVAAPVAKNTWKGKKNVVKGQWTVDEDRLLVQLVGQYGTKKWSYIAQMLPGRIGKQCRERWHNHLKPDIKKDTWTEDED KVLIHSHIEIGNKWAEIAKRLPGRTENSIKNHWNATKRKQYSKRKCRSSKYPRTSILQDYIKSLNLVNSTSTKRSSSSKNNTTTTTAAAAASNAIIPAAP LVSARRPEHNNSQSLLHPQLSMDHLYEENDRLVPNFDFMSNEEVPDFGFDDEIFQDRCSIDSFLDGLSSCELLVDEKSFNKSVEDAMLPMPFEVKKEMDL VEMMNLQGQAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	0	1
					Lus10016041 [exp]	2.2	0.9444
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	2.4	0.9509
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	2.8	0.9486
					Lus10038154 [exp]	4.0	0.9461
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	5.2	0.9466
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	8.8	0.9434
AT2G20835			unknown protein		Lus10039793 [exp]	10.1	0.8828
AT1G50650			Stigma-specific Stig1 family p...		Lus10000696 [exp]	10.2	0.8043
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	10.2	0.9248
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	10.4	0.9405

Compare expression of checked genes

Lus10042111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.