Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 304 / 1e-87 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 257 / 3e-70 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 202 / 1e-53 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G35450 170 / 4e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 166 / 8e-42 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58807 165 / 1e-41 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 165 / 1e-41 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 160 / 4e-40 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 157 / 6e-39 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 155 / 2e-38 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028279 [exp] 1133 / 0 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 504 / 5e-160 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 456 / 9e-143 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 454 / 6e-140 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 335 / 5e-97 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 317 / 8e-91 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 313 / 3e-90 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 296 / 2e-83 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10006794 [exp] 273 / 2e-81 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G271800 [exp] 556 / 0 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 553 / 7e-180 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 531 / 2e-171 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 534 / 7e-170 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 416 / 3e-128 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 411 / 5e-126 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 399 / 2e-121 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 391 / 1e-118 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 388 / 1e-117 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136266 [exp] 374 / 2e-112 AT3G14470 412 / 2e-126 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10042117 pacid=23153883 polypeptide=Lus10042117 locus=Lus10042117.g ID=Lus10042117.BGIv1.0 annot-version=v1.0 ATGGCAGTTTCTCTGTTCAGCGTTGGCAAAACGATCCTTGAGAAATTGGGTCCTCTTATTCAGCAAGAGGCTTCCCTGCTGTGGAACCTCCGATCTGAAC TCGAGAAGCTGAATGGCACCGTGACTGCCATTCAAGCACTCTTGCTTGATGCAGAGGAGCAGCAAGTGCACAGTCATCAAGTCAAAGACTGGCTCGAGAA GCTGACGGTTTCGTTGTTTGATGCAGAGGATCTGCTTGATGATGTTTCCACCGAGGCTCTACGCAGGGAAGCAGCTGCACCGGATGGAGATAACTTCAAC GTTAGAATTCGATGCTGGACTGCGGTATGCTTCCTTCTCTCAGTCCCAAGCCTCTTGATTTATGGTCTGAAATTGGCTCATAAAGTTAAGAGTCTTAGGG AGAAACTGGATGGTATATATGCTGATAACACACAGTTACACCTGACACCTCGCTTTGAAGAGAAAGGGAAAATGAGGAAGCATATCCACACTGTTTCCTC CATCCCCGATATGGTTGTCGGGCGAGAGGATGACTTGAAGAAGATTAAGAACCTTCTTCTTTTAGCTAATAGTGAGACTAGAAGCAGTAGTGGTAATGTT GTCTCTGTGATTCCCATAGTTGGAATTGGTGGTATGGGGAAAACCACACTTGCTCAACTCATCTACAATGATAGGATTATCAAAGAGGAGTTTAAGTTGA GATTGTGGGTATGTGTGTCGGAGGATTTCGAGGTCAATGTGATCGTCCAAAAGATTCTAGAGTCCGCGACAGGGGACGAAAGACAGAATCTTGAACTCGC AACTCTAACGAAACAACTCGTCGGACACATCAGTGGAAAGAAGTACCTTCTGGTACTGGACGATGTGTGGAACTTCGATCCTGAGAAATGGGATGCGTTG AGATCAGTGCTTAGAAGTGGTGCTAGTGGAAGCAAGATATTGGTCACCACACGGTTTGAAAACTACGCGAGGATGATGAGTCGTGGCTCGTCCTATCCAC CTTATACTTTGAGCGGTCTATCTCCCCCACAATCATGGTCACTGTTAAGGCAAATAGCAGTTGGTAGTGGTGGGGATGAGACACTAGAAGAAAACTTGGT TAATGCAGAAGAAATTAAAACTGAGATCATGAAGAAGTCTGCTGGGGTTCCTCTGGCTGTGAAAACAATAGCAAACTTGTTATATTTCAGAGATCCTCAG ACTGAGTGGTTGCATTTTCTCAGGTCTAGTGAGCTGTTAGGTGCTGAACATGAAGGTAGCATGCTACATAACTTAAAGCTGAGCTACGACTATCTTCCGT CGCATTTGAAACATTGTTTTCTACATTGCTGTTTGTACCCGAAGGACTATGAAATCCGTGTCGAAACACTAATCTACCAGTGGTGTGCACTGGGACTTAT TAAGCCCTCATCACCTGATGAATCCAGATTGAGTTTACTTGATTTGGGTCTGCAGTGTTTTATGGATTTGGCATGGAGGTCTTTTTTCCAAGAGATAAAA CGTGATTGGGCTAACAACATCAAAACCTGTAAGATGCATGATTTGATTCATGATCTTGCAGTCTCATTAGCCGGGTCTACTTTCAGACAGCTAACTGGTT CTACAGATAGAATCAACGAGAAAACTTACCACATCTCTTTGACACATGATTTCTGGCCTCCTTCTGATCTTTTGAACCACCTGGATAAAGCCAAACGTCT GCAGACGTTCTATGTCCCCCACACTGATAGATGGTATCAGCCAGGAACAAGCTGGGATGAGTCCTCTTTTCGATCTTTTGTTTCGAAATTTGGAAGTCTG CGTCTGCTTAATTTTTCCAACTCTGGGATGGAAATGGTACCCCATCAGATTGAAGGGTTAAAACATCTCAGGTATATGGACCTTTCCTACGATAAAAAGA TGACCAGGCTTCCAAACTCCATCACCATGCTCCAAAACTTACAAGTGCTCATGCTTAATAACTGTGAAAGCCTCCAGGAGTTGCCAGAAGATATTTACAA GCTTGTGAATTTATGGTTTCTTAACTGCTTTGAATGTGTCGCCTTAACTCACATGCCGGTGGGGCTGGATAAACTGACTCGTCTCGAGAAATTGACATGG TATGTGGTGGGGAATGATGGTGGCTTGGATGAGTTACAGTGGCTAAACAACCTGAGAGGAGACCTCAATATTGTGAATTTGAGACGCCTTCGCGGCCAAA GGAGATCATTGTCGCCACCATCGCTCGCATTTAAGATCGGTGCAGCAGCTAATCTTAAGGGGAAGTTCCTTCTCGAATCGCTGGCACTGAACTGGGGTGA TGGAAACACTGCAAAGGAAGTGGATGAATGGGTGGAATGCTTGAAGGAACCAGAAGAAGATGCTAAATGGGATGAATGTTTGCTGGAAAGCCTCCAACCT TGTCCCGATCTGAAACTTCTCATGGTGTTTGGATGCAAAGGAGCAAGATGTCCTAGTTGGATTTCTTCTCTAACAAATATAGTCACTCTTCAGTTGAAGT GTTGCAGAACGTGTCATGATCTATACCATTTGCAAAGACTGCCTACTCTTAAAAACCTTGTACTCGCCACATTGGTCGATTTAGTGTACATCGATCGAGA TGAAGATGAAGGTACTACTAGTACTACTACTACACTGAAGAAGCTGTTCTTCCCGTCCCTGGAGATACTTCAAATGAGTGATTGTCCTAAACTGAAGGGA TGGAGTATGGAGGCAGTACCCCAATTCCCTAAGCTTTCCAAACTGTATGTGCTTAGATGCCCGTTGCTGAATTCAATGCCGTTATTCCCAACGCTCGATG ATCAGCTGATATTGGTGGACACTAGTGTACAACCGCTGCTGCGAACATTGAAAGTAAACGTCCATTACCCTCTGTCCAAACTGAAGAAACTGCAAGTTTG GAGTATCGATAATCCCCCGAAGGAGTGGCTGCAGGGAATGCAACACCTCACCTCTTTGGAAAGGTTTAGTATAAGGCATTGTTCAGGGCTTGATGAGACT TTGGATTGGCAAAACATATCCCACGTCCCGGATATCTTTGTCGATGGGCACTACATTGATCGATTCGACAGGGCCCGGATGGATAAGGATCACTGGAACA ACTTCCCCCAGATGCTAAAGGTTTGA
AA sequence Show only first row Show all	>Lus10042117 pacid=23153883 polypeptide=Lus10042117 locus=Lus10042117.g ID=Lus10042117.BGIv1.0 annot-version=v1.0 MAVSLFSVGKTILEKLGPLIQQEASLLWNLRSELEKLNGTVTAIQALLLDAEEQQVHSHQVKDWLEKLTVSLFDAEDLLDDVSTEALRREAAAPDGDNFN VRIRCWTAVCFLLSVPSLLIYGLKLAHKVKSLREKLDGIYADNTQLHLTPRFEEKGKMRKHIHTVSSIPDMVVGREDDLKKIKNLLLLANSETRSSSGNV VSVIPIVGIGGMGKTTLAQLIYNDRIIKEEFKLRLWVCVSEDFEVNVIVQKILESATGDERQNLELATLTKQLVGHISGKKYLLVLDDVWNFDPEKWDAL RSVLRSGASGSKILVTTRFENYARMMSRGSSYPPYTLSGLSPPQSWSLLRQIAVGSGGDETLEENLVNAEEIKTEIMKKSAGVPLAVKTIANLLYFRDPQ TEWLHFLRSSELLGAEHEGSMLHNLKLSYDYLPSHLKHCFLHCCLYPKDYEIRVETLIYQWCALGLIKPSSPDESRLSLLDLGLQCFMDLAWRSFFQEIK RDWANNIKTCKMHDLIHDLAVSLAGSTFRQLTGSTDRINEKTYHISLTHDFWPPSDLLNHLDKAKRLQTFYVPHTDRWYQPGTSWDESSFRSFVSKFGSL RLLNFSNSGMEMVPHQIEGLKHLRYMDLSYDKKMTRLPNSITMLQNLQVLMLNNCESLQELPEDIYKLVNLWFLNCFECVALTHMPVGLDKLTRLEKLTW YVVGNDGGLDELQWLNNLRGDLNIVNLRRLRGQRRSLSPPSLAFKIGAAANLKGKFLLESLALNWGDGNTAKEVDEWVECLKEPEEDAKWDECLLESLQP CPDLKLLMVFGCKGARCPSWISSLTNIVTLQLKCCRTCHDLYHLQRLPTLKNLVLATLVDLVYIDRDEDEGTTSTTTTLKKLFFPSLEILQMSDCPKLKG WSMEAVPQFPKLSKLYVLRCPLLNSMPLFPTLDDQLILVDTSVQPLLRTLKVNVHYPLSKLKKLQVWSIDNPPKEWLQGMQHLTSLERFSIRHCSGLDET LDWQNISHVPDIFVDGHYIDRFDRARMDKDHWNNFPQMLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	1.4	0.9629
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	2.0	0.9606
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	2.4	0.9492
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	2.8	0.9517
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	3.0	0.9532
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	3.9	0.9303
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	4.2	0.9403
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	4.5	0.9507
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10031059 [exp]	4.9	0.9200
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	4.9	0.9422

Compare expression of checked genes

Lus10042117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.