Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 323 / 7e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 297 / 5e-83 transmembrane receptors;ATP binding (.1.2) AT1G27180 289 / 3e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 255 / 2e-69 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16890 241 / 6e-65 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 241 / 8e-65 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 228 / 6e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45050 226 / 6e-60 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G16920 224 / 2e-59 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G51560 224 / 2e-59 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004257 [exp] 1947 / 0 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 984 / 0 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 975 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 948 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 799 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 716 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 709 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026011 [exp] 694 / 0 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10010574 [exp] 678 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206400 [exp] 358 / 7e-107 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 350 / 4e-101 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002400 [exp] 340 / 2e-100 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 339 / 1e-98 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 330 / 9e-98 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 334 / 1e-96 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 333 / 2e-96 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 327 / 7e-94 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G003285 [exp] 326 / 9e-94 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 324 / 2e-93 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10042165 pacid=23154011 polypeptide=Lus10042165 locus=Lus10042165.g ID=Lus10042165.BGIv1.0 annot-version=v1.0 ATGAAAGGATGGCACGTTACTGACTTGAATGGGCAAGGAAGTGTAGTAGATGATGTGTTTGAACATGTGCTGTCACTTTTGAACAAGAATTACTCGTTGG TGACTGATGAGTTAGTTGGGATCCATCGTCATGTGCGAAAAGTGGTGAAATTGCTCGATGAAGATTCCGGAGGTGTAAAAGTTGTCGGCATTCACGGGAT GGGTGGCATTGGCAAGACAACTATTGCCACTGCTGTCTACAACGAAATCAGTTCACGCTTCAACCGCTGCAGCTTTCTACAAGATGTGCAAGAAACATTA CAGCAACACGAGGGTATCGTCGCTTTACAGAATAAGCTAATCTCCAGCATTACAAGAAACGCTACTCCTGTTTGTGATGCTAGCGAAGGACTTCGGGTGA TACAGGACAGAGTTTGTCAACACAGAGTCTTTATAGTTCTCGATGATGTCGGTGATAAGTTTGATTATGAGAAGATCTTGGGGCGGTACGAGAACTTTTT CCCGGGAAGTAGGTTTGTCATCACAACTAGGAATAAGAAGGTGTTCACCTCTATTAAGGGATCTAAGTTGTATGAACCTGAGGAAATGAATGATGATGAT TCACTTCAACTCTTCAGCAAGCATGCATTTAGAAACGATTCTCCTCCCAAGGAATATGTAACTTTATCTGGACAAGCGGTCTTACTTGCTGCAGGGCTTC CTTTGACTCTTAAAGTTGTGGGATCTCTTTTGTTCGGTGAAGATAAAGAGGTTTGGGATGAGAAGTTGATGCAGTTGAAAGAGATTCCTCCTACAGAGGT CTTGGGAAAGTTGAAAATAAGCTACAATGCGTTGACATACGCGGAGCAACAAATATTTCTCGATATTGCTTGCTTCTTCATTGGAGAGACTAGAGAAGTG GCTTCTTTTATGTGGAGCGACTGTAAATTTTATCCTGTCAGTGCGATCAGTGCCCTCATTCTTAGGTCTTTGATCAAAATTGGACCAAATAACGAGTTCA AGATGCACGAACAACTTAGAGATCTCGGCAGACAAATTGTACGTGAGGAGAATGTTGAGCATTTATGGAAGCGCAGTAGGATATGGTCTAATGAGGATGC CGTGGACATGCTAGACCGCAAAAAGGGAACTGAGCTGGTGAAAGCGCTAAAAGTGAACTTATATATGAAATTTCCTCTTACAAATCAACACTTCGAGAAA TTGCTGGAGTTGAGATACCTTGAAGCACACCATGCAGAAATTGATGGGGACTTTGACGAACTTCTTTCAGATTTGAGATGGATAAGATTGCTACGTCTTC AAGGGAATTCAGCACCAACTAATTTTTACCTAAAGAAGTTGGTGATACTTGACGTACGTGACAACCTCATAGTAGATAACTGGCAAGGCTGGAACCAGCT CAAGATGGCAAAAATGCTGAAAGTTCTAAACCTCGTAGACTGCTATAAGTTAACCAAAGCTCCTGATCTGTCCGCACATGGAAGTCTAGAGCTGTTAAAT CTTCACGGATGCAGTGACATGGTTCAAGAGCTTGCAATTGGACACTTGAAGAAGCTGAAGAAGCTGAAGCTCAGCTATTCCGGAATAACAAGGCTATCTG GTGGAATGGGGCTGCTTCAGAAGCTTGAGGAGCTAGATGCATGGGAATGTACAAATTTGGAAGAACTCCCCGGAGATATTGGAGACCTGCAATCTCTTAA AATCTTGAAAGTCACATCTCGGAAGGATTTCCAGATGCCAGATCTTCCTTCAGGTATAAAGGAGCTTGCTGTTTCATCTCTGGTTCCCAATCTTTCTGAT CTGAAGGACTTGGAAGAATTGGCCATTAACACTTGCCAAAGTGTTGATAGTCCTCAGGATATATGGACGCTATCGAATTTAAAATCTTTCAATCTGTGCC AGTCGGACACGAAAAGTCTGCAGGTCCTTCCATCATCTCTACAGAAGCTTTTTGTTCGGCAATGTCCATTGTTGGAGGCATTGCCTGATCTTGCCAACCT GAAGAGCTTGATAGAGTTAACGCTATTTTGCTGTCCCAAGGTTCCTGAGATTCAAGGCCTTGGAGAGCTCAAATCATTGGCGACCTTGGAAATGACAGAT GGTGCAAGTCTAATCAATCTGCACGGCCTCGAAAATCTCACGTCCTTGACGTTCTTGGATGTGGAGAAGTGTCATCTGTTGGAAAATTTACCCAATCTAG CCGATTTAAAGAAGGTACGAACGCTGAAAATCCGTCGTTGTTCTCGTATTTCGGGAATTCAAGGCCTTGGTGAAATGGAGTCTTTAGAACATGTGGAGAT CTATGATTGTGGACTTCTTCAAACGTTGCCTGATCTTTCAAAGTTATCCAAGCTAAAAGATCTAACGATCTGCAAATGCCGGAGATTGACTGGTATCGAA GGCATTGGATCTATGGAAGCACTGGAACACTTGAATCTGAGTGAGTGTCAGTTGATAAAGAGGCTGCCTTCTTTGTCAAAGCTGAGAAAATTGAAGAAGC TGATCGTGAAGAAGAACACTCATTTGGCCGAGATCGAGAGTGTCGATAACTTGAGCTTATTGGAGACTCTGGAGCTCCCAAATTGCCTGTCACTGGAAAG GCTACCTAGCCTTTCCAGCCTCAAGAGTCTAAAAACTTTAGACGTCGACTGTTGCATGAGTTTGGTTGAGGTTACCGGCTTCGACGGACTCGAGTCACTG GAATCTTTGAGTATGAATGCTTGCTGGTCGATCGAGAAGATTCCAAGCGTTTCGAATATGAAATGCTTATCTCATCTGAGGCTAAATGGCTGTGAGAAAC TAACAGAACTCCTCGGAGTCGAAGGACTAGACTCCTTGAAAGTGATGGATCTCCAAGGCTGCAAGTCAGTTAAATTCCTGAACATCAACAATCTTAGACA TCTAGAGAAACTAACTCTCAAAGATTGCGAGAACTTAACCGAACTCTCGGGACTCAAAGGACTCAACTCTCTGAAAGTGCTGGATATGGATTCGTGCAGG TCACTTGTGAAGTTGGCTAGCCTATCCAATCTCAGGCAATTGGAAAAACTGTTTCTAGAAGATAGTGAAAAGCTGACAGAAGTTTCAGGACTCGGAGCAA TCGTGATGCTGCAAGTGATGAGTATTTACGGGTGCACATCGATCGAGAAGTTACCTAACATCTCGAATCTAAGACGCCTTCAATATTCGTCTCTGATTGG CTGTGATAAACTAAGTGAGCTGGTGGGAATTGAAAGTTTGGAGTCACTGAAGGAGCTGAAACTGAATTTCTGCAAGTCGATCGAGAGGTTACCGAACCTT TCGAGTCTCGGACATTTGGAGAGGTTCTCGTTAAGAGGTTGTGAAACGCTTGAATACCTGCAGGGACTGGAGGAGTTGAAATCCTTGAAGTTCTTGGATG TCTCTGGATGCCGATTGATCAGGGAAATACCACATCTTCCAAATACAAAAGTCATCAGATAG
AA sequence Show only first row Show all	>Lus10042165 pacid=23154011 polypeptide=Lus10042165 locus=Lus10042165.g ID=Lus10042165.BGIv1.0 annot-version=v1.0 MKGWHVTDLNGQGSVVDDVFEHVLSLLNKNYSLVTDELVGIHRHVRKVVKLLDEDSGGVKVVGIHGMGGIGKTTIATAVYNEISSRFNRCSFLQDVQETL QQHEGIVALQNKLISSITRNATPVCDASEGLRVIQDRVCQHRVFIVLDDVGDKFDYEKILGRYENFFPGSRFVITTRNKKVFTSIKGSKLYEPEEMNDDD SLQLFSKHAFRNDSPPKEYVTLSGQAVLLAAGLPLTLKVVGSLLFGEDKEVWDEKLMQLKEIPPTEVLGKLKISYNALTYAEQQIFLDIACFFIGETREV ASFMWSDCKFYPVSAISALILRSLIKIGPNNEFKMHEQLRDLGRQIVREENVEHLWKRSRIWSNEDAVDMLDRKKGTELVKALKVNLYMKFPLTNQHFEK LLELRYLEAHHAEIDGDFDELLSDLRWIRLLRLQGNSAPTNFYLKKLVILDVRDNLIVDNWQGWNQLKMAKMLKVLNLVDCYKLTKAPDLSAHGSLELLN LHGCSDMVQELAIGHLKKLKKLKLSYSGITRLSGGMGLLQKLEELDAWECTNLEELPGDIGDLQSLKILKVTSRKDFQMPDLPSGIKELAVSSLVPNLSD LKDLEELAINTCQSVDSPQDIWTLSNLKSFNLCQSDTKSLQVLPSSLQKLFVRQCPLLEALPDLANLKSLIELTLFCCPKVPEIQGLGELKSLATLEMTD GASLINLHGLENLTSLTFLDVEKCHLLENLPNLADLKKVRTLKIRRCSRISGIQGLGEMESLEHVEIYDCGLLQTLPDLSKLSKLKDLTICKCRRLTGIE GIGSMEALEHLNLSECQLIKRLPSLSKLRKLKKLIVKKNTHLAEIESVDNLSLLETLELPNCLSLERLPSLSSLKSLKTLDVDCCMSLVEVTGFDGLESL ESLSMNACWSIEKIPSVSNMKCLSHLRLNGCEKLTELLGVEGLDSLKVMDLQGCKSVKFLNINNLRHLEKLTLKDCENLTELSGLKGLNSLKVLDMDSCR SLVKLASLSNLRQLEKLFLEDSEKLTEVSGLGAIVMLQVMSIYGCTSIEKLPNISNLRRLQYSSLIGCDKLSELVGIESLESLKELKLNFCKSIERLPNL SSLGHLERFSLRGCETLEYLQGLEELKSLKFLDVSGCRLIREIPHLPNTKVIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007121 [exp]	3.0	0.9278
AT5G24350			unknown protein		Lus10007768 [exp]	9.3	0.9211
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	12.1	0.8656
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	12.3	0.8674
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	13.4	0.8381
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	13.7	0.8781
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	15.7	0.8487
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	21.0	0.8660
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	22.6	0.8550
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	24.2	0.8889

Compare expression of checked genes

Lus10042165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.