Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 525 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 518 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 503 / 9e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 482 / 1e-166 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28600 449 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 446 / 2e-153 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 426 / 4e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 398 / 1e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 358 / 5e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004258 [exp] 1057 / 0 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 552 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 538 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 512 / 2e-178 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 487 / 8e-169 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 479 / 1e-165 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 453 / 1e-155 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 444 / 6e-152 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10005256 [exp] 439 / 2e-147 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067400 [exp] 642 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 550 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 549 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 548 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 544 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 540 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 521 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 521 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 518 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 372 / 4e-126 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10042166 pacid=23153871 polypeptide=Lus10042166 locus=Lus10042166.g ID=Lus10042166.BGIv1.0 annot-version=v1.0 ATGGTGAAAATGGCGGGAATGCCACAGTTATTGACGGAGATGTGGTCGACATCGACGGTGGGTTCAACCATCGCCACCTTGCTATTCCTCTCTGCCATGT TCCGACAATACTTCCCCTACGAGCTCCGCCGTTACTTGGAAAGCCAATTCCACCGCCTCTCCATCCACTACTTCAACCCATACATAAAAATCTCCATCCA CGAGTTCACCGGAGACCGCCTCAAGCGCAGCGAGGCCTATTCCGCCATCGAGGCCTACCTCTCAGCCAACTCCTCCCGCACCGCCGCCCGCCTCAAGGCC GAGATGTCCTCCAGGGACAGCTCCTCTCTGGTCCTCACCCTCGACGACCACGAGCGAGTCTCTGACGACTTCCGCGGCGTCAGAGTCTGGTGGCACGCCG CCAAGCTCGTCTCCTCCCAGCAGCCTCACTCCCCTTACTCCGCTGCCGAACGTCGCTACTACGGGCTGTCCTTCAACAAGCGCCACCGCCAGCTCATCAC CGAGGACTACCTCCGCCACGTGGTGCGGGTCGGGAAGGAGATCCGGGCCCGGAACCGGCAGCGGAAGCTCTACACCAACAGCTCAGCCAACAAGTGGCTG AGCTTCAACAAGACTAGTTGGAGCCACATCCCGTTCGAGCATCCGGCCACTTTCGACACCATGGCGATGGATCCGAACTTGAAGAAGGAGATCATCGACG ATCTCGTCACTTTCACCGAGAGCAAGGATTTCTACTCCAGGATCGGTAAAGCCTGGAAACGCGGCTACCTTCTGTACGGACCTCCCGGAACGGGGAAGTC CACCATGATCGCAGCAATGGCGAATCTGCTGAACTACGACGTCTACGATCTGGAGCTGACGGCGGTGAAGGACAACACCGAGTTGAGGAAGCTTCTGACC GACACGACGAGTAAAGCGATTATTGTGATCGAGGACATTGATTGCTCGCTGGATCTGACAGGGCAGAGGAAGACGATGAAGCAGAGTAGTACTAAGTTAG GGTTTGATGACCTTGAGAGTTTGATTGAGAAGGAGATAATGAATCAGAAGGCCAAAATGGGGAAAGATCATGAGATTCAAGATATCAACAGTAGTAGTAG CAGGGTTACGCTCTCTGGACTTTTGAATTTCATCGATGGATTGTGGTCGTCGAGTGGAGGGGAGAGGCTGATTGTGTTCACTACCAACCATGTGGAGAAG CTGGATCCTGCTCTGATAAGGAGAGGCAGGATGGACAAGCATATCGAGCTTTCTTACTGCGGATTCGAGGCGTTTCGAGTTCTGGCGAGTAATTACCTGA GATTGGAAGATCATCCGATGTTTAAGGAGGTGGAGAGGCTGATTAAGGAGATCAAGATCACTCCTGCTGATGTTGCTGAGAATCTTATGATCAGGTCGCC TTCAGACGATGCTGGTAGGTGCCTCGCCAGGTTGATTGCGGCCATGGAGGAAGTTAAGGACACTGCTGATGCTGTGAAGCCGGAGGTTGAAGCTCCGGAT AATGGGTCGGAGACGAAAACGGGGAGTTCGCCGGATGTTGGGGTCGTCTGTCAGATGATCAAGACTGACTTTTGCTGA
AA sequence Show only first row Show all	>Lus10042166 pacid=23153871 polypeptide=Lus10042166 locus=Lus10042166.g ID=Lus10042166.BGIv1.0 annot-version=v1.0 MVKMAGMPQLLTEMWSTSTVGSTIATLLFLSAMFRQYFPYELRRYLESQFHRLSIHYFNPYIKISIHEFTGDRLKRSEAYSAIEAYLSANSSRTAARLKA EMSSRDSSSLVLTLDDHERVSDDFRGVRVWWHAAKLVSSQQPHSPYSAAERRYYGLSFNKRHRQLITEDYLRHVVRVGKEIRARNRQRKLYTNSSANKWL SFNKTSWSHIPFEHPATFDTMAMDPNLKKEIIDDLVTFTESKDFYSRIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLT DTTSKAIIVIEDIDCSLDLTGQRKTMKQSSTKLGFDDLESLIEKEIMNQKAKMGKDHEIQDINSSSSRVTLSGLLNFIDGLWSSSGGERLIVFTTNHVEK LDPALIRRGRMDKHIELSYCGFEAFRVLASNYLRLEDHPMFKEVERLIKEIKITPADVAENLMIRSPSDDAGRCLARLIAAMEEVKDTADAVKPEVEAPD NGSETKTGSSPDVGVVCQMIKTDFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	0	1
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	3.2	0.8783
AT3G49220			Plant invertase/pectin methyle...		Lus10018103 [exp]	5.7	0.8207
					Lus10005901 [exp]	6.7	0.8500
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	8.0	0.8501
					Lus10013331 [exp]	8.8	0.8340
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	9.7	0.8464
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	11.8	0.8500
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	11.8	0.7998
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	18.7	0.8194
AT1G74530			unknown protein		Lus10023603 [exp]	27.1	0.7378

Compare expression of checked genes

Lus10042166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.