Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47130 225 / 3e-73 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 221 / 6e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 219 / 4e-71 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 219 / 7e-71 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 211 / 8e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 176 / 8e-54 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 172 / 6e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 170 / 3e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 170 / 3e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 162 / 1e-48 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009992 [exp] 234 / 8e-77 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 229 / 6e-75 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 209 / 9e-67 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 206 / 1e-65 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 180 / 1e-55 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 179 / 3e-55 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 179 / 3e-55 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 179 / 3e-55 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 180 / 4e-55 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065600 [exp] 293 / 5e-100 AT2G47140 258 / 1e-86 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G065700 [exp] 263 / 3e-88 AT2G47140 248 / 1e-82 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105700 [exp] 244 / 7e-81 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G104800 [exp] 239 / 6e-79 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 238 / 2e-78 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G115300 [exp] 214 / 6e-69 AT2G47140 346 / 3e-121 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 204 / 4e-65 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 199 / 7e-63 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 197 / 2e-62 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 196 / 6e-62 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042181 pacid=23153560 polypeptide=Lus10042181 locus=Lus10042181.g ID=Lus10042181.BGIv1.0 annot-version=v1.0 ATGACGAGGAAGCTTCAAGGCAAGGTAGCGATCATCACCGGCGGAGCAAGCGGCATCGGAGAGGAAACCGCCCGTCTCTTCGCCGACCAGGGAGCTAAGA TGGTCGTGATCGCCGACATCCAAGACGAGCTCGGCCAAAACGTCGCCGCATCAATCGGCCCCAACAAATGCGCCTACAAACGGTGTGACGTCACCTCGGA GGACCAAGTCAAATCACTCGTTGACTACACGGTCGCTACCTTCGGCCACCTCGACATCATGTTCAGCAACGCCGGAGTCATCACCACCACCTCCCCACAA ACGATCCTCGACCTCGACCTGGACGCTATGGAGTCAACGTTTGCGGTCAACGTTATGGGGAACGCGGCGTGCGTCAAGCACGCCGCCAGGGCCATGGTGG CGGCGGGCGGCGGAGGACAACGTAGAGGAAGGAAGGGGAGCATCGTGTGCACGGCGAGCGTGGCGGGGAGCACGGGAGGGAGGAGGATGTCGGACTACTT TATGTCCAAGCACGCTGTGGTCGGGCTGGTGAGATCGGCGAGCTTGCAGCTAGGGGAGCACGGGATAAGGGTGAACTGTGTGTCGCCTTACATGGTGGCG ACGCCAATGGCGACGAGAGGGACATTCGGAGCAGTAGGAGCGACGGCTGATTCGGTAGAGAGTAGCTCCGAGGAGAATATGTGCCTTAAGGGGTTGCCGC TCCGGGCGAGGAACGTGGCGGATGCTGTGCTATTTTTGGCTAGTGAGGACTCCGATTTGATTACCGGGCTTGATCTAGTTGTCGACGGCGGCTACTCCGG CCGCCGTTGA
AA sequence Show only first row Show all	>Lus10042181 pacid=23153560 polypeptide=Lus10042181 locus=Lus10042181.g ID=Lus10042181.BGIv1.0 annot-version=v1.0 MTRKLQGKVAIITGGASGIGEETARLFADQGAKMVVIADIQDELGQNVAASIGPNKCAYKRCDVTSEDQVKSLVDYTVATFGHLDIMFSNAGVITTTSPQ TILDLDLDAMESTFAVNVMGNAACVKHAARAMVAAGGGGQRRGRKGSIVCTASVAGSTGGRRMSDYFMSKHAVVGLVRSASLQLGEHGIRVNCVSPYMVA TPMATRGTFGAVGATADSVESSSEENMCLKGLPLRARNVADAVLFLASEDSDLITGLDLVVDGGYSGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	2.0	0.9587
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	2.2	0.9623
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	3.5	0.9510
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	3.9	0.9560
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	4.9	0.9559
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	7.4	0.9537
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	8.4	0.9498
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	8.9	0.9343
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	9.4	0.9396
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	10.2	0.9272

Compare expression of checked genes

Lus10042181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.