Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47600 285 / 2e-94 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT1G74650 280 / 2e-92 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT5G62470 280 / 5e-92 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT3G28910 264 / 4e-86 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT1G08810 237 / 3e-76 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 188 / 1e-56 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT2G31180 179 / 2e-54 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G61250 181 / 4e-54 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G01140 182 / 6e-54 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G23250 178 / 2e-53 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008616 [exp] 476 / 2e-168 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10002056 [exp] 325 / 3e-110 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10024218 [exp] 298 / 4e-100 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10015369 [exp] 259 / 3e-84 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10009522 [exp] 239 / 7e-77 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 238 / 5e-76 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10030677 [exp] 235 / 3e-75 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10005245 [exp] 228 / 3e-72 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10033003 [exp] 186 / 2e-55 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126700 [exp] 297 / 1e-98 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.017G082500 [exp] 286 / 7e-95 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.013G067500 [exp] 241 / 2e-77 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 239 / 9e-77 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.017G086300 [exp] 190 / 2e-56 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.019G118200 [exp] 185 / 3e-55 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.012G140700 [exp] 183 / 4e-55 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.013G148600 [exp] 183 / 3e-54 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 182 / 6e-54 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G157600 [exp] 181 / 6e-54 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042200 pacid=23153629 polypeptide=Lus10042200 locus=Lus10042200.g ID=Lus10042200.BGIv1.0 annot-version=v1.0 ATGGGGAGACCGCCTTGCTGTGACAAAGTAGGAGTGAAGAAAGGGCCATGGACTCCTGAGGAAGACATCACCTTGGTCTCTTACATTCAGGAACACGGCC CTTCCAACTGGCGATCTGTTCCTTCCAATACTGGACTGTTGAGATGCAGTAAGAGCTGCCGACTGAGATGGACAAACTATCTCCGCCCTGGAATCAAGCG GGGTAATTTCACCCCTCACGAGGAGAAAATGATCATCCACCTCCAAGCCCTCCTCGGCAACAGATGGGCGGCGATTGCATCGTACCTGCCGCAGAGGACG GACAACGACATCAAAAACTACTGGAACACTCACCTGAAGAAGAAGCTCAAGAAGCTCCATGACGGCGGAGGAGAAGGAGGAGACGGAGGAGCTGGATCCT CTCCCTCCGCTGCCGGCTCACCGCAGACGAAAGGTCAGTGGGAGAGGCGTCTCCAGACCGACATCGGCCTCGCCAAACAGGCCCTTTGTGAAGCGCTCTC CCTCGACAAACCGATTCCCACCGATGATTCTTCCGCTGCTCCTGCTGCCGTTGTTATGGAGTCTAAACCCTCTATCTCAACCTCCCCGTCGTCGGGTAGT GGTGCTACCACCATCATCTCCAACGCCGCGAGTTACGCGTCCAGCACCGACAACATCGCCAGGCTGCTGCAGAACTGGATGAGGAAGCCAACTCATCACG ATCATATTCAGATGCAGACCAACTCTGGCACCACGCAGAACTCCGTGGCGGCGGCGGCGGCTGCGAACTCCGGATCAAGCGGTGGTGGGAGTCATAACAG CTACTTCGACTCGCTGTTCGGGTTCAACTCGTCGCCATCTGACGGCGGGACGTCCCAGTCGGTGGAGGTGGCGGCGGCGATATTCCAGGACGAGAGCAAG CCGATGATCATCCGGCAACGTCGTGGCAACTGCATCAACGATATTAACGCTGCCACCGGAGAGACTGTCTCGCCGCCAGCTCCGGCGCTGTCGCTGCTAG AGAGATGGCTGTTCGATGAGAGCACAGCGGCGGCTGTGGCTGCTCATGCTTCCGCCGGCGACGTGGTGGATCTCATGAACATCTCGTCCCTAGACGGTAC CGTTTCTGAGTTTGAGATGAATTAA
AA sequence Show only first row Show all	>Lus10042200 pacid=23153629 polypeptide=Lus10042200 locus=Lus10042200.g ID=Lus10042200.BGIv1.0 annot-version=v1.0 MGRPPCCDKVGVKKGPWTPEEDITLVSYIQEHGPSNWRSVPSNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEKMIIHLQALLGNRWAAIASYLPQRT DNDIKNYWNTHLKKKLKKLHDGGGEGGDGGAGSSPSAAGSPQTKGQWERRLQTDIGLAKQALCEALSLDKPIPTDDSSAAPAAVVMESKPSISTSPSSGS GATTIISNAASYASSTDNIARLLQNWMRKPTHHDHIQMQTNSGTTQNSVAAAAAANSGSSGGGSHNSYFDSLFGFNSSPSDGGTSQSVEVAAAIFQDESK PMIIRQRRGNCINDINAATGETVSPPAPALSLLERWLFDESTAAAVAAHASAGDVVDLMNISSLDGTVSEFEMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10042200 [exp]	0	1
					Lus10039824 [exp]	3.2	0.9055
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	7.1	0.9358
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	18.1	0.9347
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	20.9	0.8969
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	22.0	0.8910
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	23.7	0.9137
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	28.9	0.9207
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	32.2	0.8645
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	34.9	0.8540
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	37.6	0.9100

Compare expression of checked genes

Lus10042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.