Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58340 68 / 4e-12 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 57 / 2e-08 MYB TRFL5 TRF-like 5 (.1) AT1G06910 57 / 2e-08 MYB TRFL7 TRF-like 7 (.1) AT1G17520 55 / 4e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G72740 55 / 5e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT5G67580 53 / 2e-07 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G49950 53 / 2e-07 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 52 / 4e-07 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G72650 49 / 4e-06 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 49 / 6e-06 MYB TRFL3 TRF-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008606 [exp] 643 / 0 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1) Lus10024200 [exp] 382 / 4e-128 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10009912 [exp] 351 / 5e-116 AT1G15720 64 / 1e-10 TRF-like 5 (.1) Lus10020771 [exp] 127 / 3e-31 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 115 / 3e-27 ND 40 / 0.004 Lus10017320 [exp] 107 / 2e-24 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10007348 [exp] 78 / 4e-15 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10017319 [exp] 65 / 4e-11 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10003404 [exp] 61 / 2e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154500 [exp] 134 / 2e-33 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G147400 [exp] 58 / 5e-09 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 56 / 2e-08 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G054401 [exp] 56 / 4e-08 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G087000 [exp] 55 / 5e-08 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.001G292700 [exp] 53 / 2e-07 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.014G004900 [exp] 52 / 4e-07 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 52 / 4e-07 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.016G053300 [exp] 51 / 2e-06 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G170200 [exp] 51 / 2e-06 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042209 pacid=23153698 polypeptide=Lus10042209 locus=Lus10042209.g ID=Lus10042209.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCACGGGAGCCGGACAAAGATTTATCAAGGTGGGCTCTGGATTTCCTTCTCCGGCAACCAATTCCCGGAATTCTCCTCGAGAAGGTCGCCT TCAATCTCAAACACTCAGTTGTTGACTATTGCTTGGAAAAGCAGCTCAAACTCAAGCAAATCCAGTCAGAAATCTCCAAGGGTTCCATATCGGAGAATAT CCTCGAGTCCTTAGAGGCGATCGAACAACTGGAAAGGGACAGCGGAGGAGCCCCAATCTCACAGACGATGAAAACAGCGTATTGTGCAGTGGCGTTAGAG TTCACGGTTAAGGGAGGGATCCGATCGGAGTTCGTTGAGCGAATATGGAGAGGGAGAGTTCATGATTTGGAGAGTTTGAGCAGGAGGAGTGAGTTGGTTA CTGACGAGCTTAGGAAGTTCAAGGATGAGATCGAGGCTGCTGTCTGCGACGTAAATGCTTGCATGAGGTTGTTCAAATGGACGAAGCAGAACGATGCGAA GCTTCTCGTTCGTGCTTATTTAGATGAGGCGATGGCGGCTAATAATAATGAGCCTTCCTTCCTTCATTTGGCGGCGGCTAGATGGAAAAAGATGGAGCTG GAGAAGAAGAACAAGACGACGGAAGAAGGGATGGATACTGCATTTATACGAGTTCCTGATCATGTTGAACAGCCCATTTCTGGTTCACCGGATGCCAATT TAAGGAAGAGGACCAACGCGTATAACAGAGTGAAACAGATTGCTCGCAAACGCCAGAAAAAGCAAGCTAGGATTTGGGACAATCCCTCAAGCAAGTATGA TACATTGCCTAGCCCTGAAGTTAAGCAAGTACAAGATGCATTCAGATCATCTTCCATCGATTTACAAGCGGTGGTCACTGATCCACTTCCCAATGCTATG CATGTCTCCGAGTCATTAATTGCTGAAGCACCTCGGAACATCATCACCAACAAGGAGAAATCAGTTGGAAACCAGAATGAGGATAATGTGGGTGCTTCCC ACCCACCTGCCGAATCCAGTATGCCTGAATTACGTAGCAGAACTCTAGACCCTGATATTCCGGCTGAAGAAGGTAACAGGGAAGAGGTGGATGAACCAGA ACCCTCTACTCAGCAGAATCATCAAAATGTTTCTAGACCCAGCTTAATGACACGGAATCCAACTGCTTGTACATATGAGTGGGATGATTCGATAAGTAGC TTGTCTCAAGGATCATCCAATGGTGGAAGAAGAATCCGAATGACGCTTCCAAAGAGAGGTGTCGTGCTTCCACTAACGAAGGGCGATGGGATCAATGTGC CGAGGAGAAAAAAGAGGCGCTGGAGTGTCGAGGAGGAAGATGCCCTGAGGGCAGGAGTCGAAGAGTTTGGGAGGGGCTGCTGGAAGGCCATCTTATACTC GAGGCCAGAAGCATTTGTTGAGAGGACTGAGGTGGATCTGAAGGACAAGTGGAGAAACATGACGGCATATCGCTAA
AA sequence Show only first row Show all	>Lus10042209 pacid=23153698 polypeptide=Lus10042209 locus=Lus10042209.g ID=Lus10042209.BGIv1.0 annot-version=v1.0 MAAAREPDKDLSRWALDFLLRQPIPGILLEKVAFNLKHSVVDYCLEKQLKLKQIQSEISKGSISENILESLEAIEQLERDSGGAPISQTMKTAYCAVALE FTVKGGIRSEFVERIWRGRVHDLESLSRRSELVTDELRKFKDEIEAAVCDVNACMRLFKWTKQNDAKLLVRAYLDEAMAANNNEPSFLHLAAARWKKMEL EKKNKTTEEGMDTAFIRVPDHVEQPISGSPDANLRKRTNAYNRVKQIARKRQKKQARIWDNPSSKYDTLPSPEVKQVQDAFRSSSIDLQAVVTDPLPNAM HVSESLIAEAPRNIITNKEKSVGNQNEDNVGASHPPAESSMPELRSRTLDPDIPAEEGNREEVDEPEPSTQQNHQNVSRPSLMTRNPTACTYEWDDSISS LSQGSSNGGRRIRMTLPKRGVVLPLTKGDGINVPRRKKRRWSVEEEDALRAGVEEFGRGCWKAILYSRPEAFVERTEVDLKDKWRNMTAYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	0	1
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	2.2	0.8867
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	2.4	0.8650
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	4.2	0.8638
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	8.9	0.8413
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	11.6	0.8130
					Lus10005797 [exp]	17.2	0.8436
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	17.3	0.8635
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	17.9	0.8271
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	19.4	0.7970
AT4G12640			RNA recognition motif (RRM)-co...		Lus10016070 [exp]	19.5	0.7819

Compare expression of checked genes

Lus10042209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.