Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06890 201 / 2e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 200 / 4e-61 Nucleotide/sugar transporter family protein (.1.2) AT2G28315 137 / 3e-37 Nucleotide/sugar transporter family protein (.1) AT2G37710 105 / 9e-25 RLK receptor lectin kinase (.1) AT3G53810 100 / 6e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 97 / 1e-21 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 96 / 2e-21 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 93 / 2e-20 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 89 / 4e-19 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43690 89 / 4e-19 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008596 [exp] 259 / 9e-84 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10024194 [exp] 238 / 6e-78 AT1G06890 238 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10009918 [exp] 178 / 4e-53 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10008597 [exp] 161 / 6e-44 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 154 / 2e-41 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 147 / 4e-39 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 146 / 1e-38 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10041314 [exp] 119 / 8e-31 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 118 / 3e-30 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128900 [exp] 222 / 9e-70 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 216 / 3e-67 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.004G211900 [exp] 140 / 2e-38 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 140 / 2e-38 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.006G088600 [exp] 132 / 1e-33 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 132 / 1e-33 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 122 / 2e-30 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 117 / 8e-29 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088648 [exp] 116 / 1e-28 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 114 / 9e-28 AT2G37710 801 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10042217 pacid=23153827 polypeptide=Lus10042217 locus=Lus10042217.g ID=Lus10042217.BGIv1.0 annot-version=v1.0 ATGGAAAATATCGTTATTGGCCACGCCTTTTATCCAGACCCGATAACGTTCAAGACCAACGATCCAAACAGCACAGTTTCATCCTTCTCCACTTCCTTCG TCGTCGCGATTTTACCTCAGTGCCCGAACCTCGGTGGCCACGGGATCCCCGGTTCGCTTCCTAGCAAGTACCTCGGCCTGTTCAACAAGTCCAACATCGG GAATGCTACCAACCATGTATTTGCGGTCGAGCTCGACACCATTTTGAGCAGCGAGTTTGGGGACATTGATAATAATCATGTCGGGATCGATATCAATGGG CTGGATTCCAGGTCAGCAGCTCCATCTGGTACTATGATGATTCTGATGGCAGATCTGGATCAGGGGGGTAGGGAGCACTTGGAGGAGGGGGGAAAAGTGA AGATGAGTACTACTGAGGGCCAGAAGTTCCAGCTGGGGACGGTGGGTGCTTTGAGCTTGTCGGTTGTGTCGTCTGTCTCTATTGTCATATGCAACAAGGC GCTTATCAGCACTCTTGGTTTTACTTTCGCCACTACATTAACAAGCTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCATTGTGGATGAAGTTC TTTGAACACAAGCCTTTTGATGCAAGAGCAGTATTGGGATTTGGCATATTAAATGGGATTTCAATTGGACTTCTAAATCTGAGCTTGGGTTTCAATTCCG TCGGTTTCTACCAGTTCTTCATCGTTCTTTCTTGCCTGATATCCGTCTCAGTAAATTTCAGTACGTTTCTCGTGATCGGAAAGACATCTCCGGTCACCTA CCAGGTCCTAGGCCACCTGAAAACGTGCCTAGTTCTGGCATTCGGTTACGTACTGCTTCGTGACCCATTTAGCTGGAGGAACATCTTAGGTATCCTTATC GCCGTAGTCGGGATGGTTCTATATTCGTACTGTTGCACGTTGGAGAGCCAGCAGAAGTCTCAAGAGCCACCAGCTAAACAGCCTGAGGTCGACGAAAGTG AGTCCGGTCCCCTGATGGATGCGGAGAATGGGAGTGGAGGAGATGGTGGCGTAAAAGCCCCGGCATGGAAGTCGAACAAGGACCTGGATGCATGA
AA sequence Show only first row Show all	>Lus10042217 pacid=23153827 polypeptide=Lus10042217 locus=Lus10042217.g ID=Lus10042217.BGIv1.0 annot-version=v1.0 MENIVIGHAFYPDPITFKTNDPNSTVSSFSTSFVVAILPQCPNLGGHGIPGSLPSKYLGLFNKSNIGNATNHVFAVELDTILSSEFGDIDNNHVGIDING LDSRSAAPSGTMMILMADLDQGGREHLEEGGKVKMSTTEGQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVALWMKF FEHKPFDARAVLGFGILNGISIGLLNLSLGFNSVGFYQFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILI AVVGMVLYSYCCTLESQQKSQEPPAKQPEVDESESGPLMDAENGSGGDGGVKAPAWKSNKDLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	1.0	0.9301
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	1.4	0.9274
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	2.4	0.9236
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	3.5	0.9112
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	3.7	0.9031
AT5G09310			unknown protein		Lus10037415 [exp]	5.9	0.9110
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	6.6	0.8959
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	7.7	0.9057
AT4G38640			Plasma-membrane choline transp...		Lus10034492 [exp]	8.2	0.9186
AT1G36730			Translation initiation factor ...		Lus10004057 [exp]	8.7	0.8967

Compare expression of checked genes

Lus10042217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.