Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30210 652 / 0 LAC3 laccase 3 (.1) AT5G07130 612 / 0 LAC13 laccase 13 (.1) AT5G05390 580 / 0 LAC12 laccase 12 (.1) AT2G40370 555 / 0 LAC5 laccase 5 (.1) AT2G29130 422 / 2e-142 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 419 / 1e-141 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G09360 414 / 3e-139 LAC14 laccase 14 (.1) AT5G03260 409 / 9e-138 LAC11 laccase 11 (.1) AT5G60020 407 / 1e-136 LAC17, ATLAC17 laccase 17 (.1) AT5G01190 407 / 1e-136 LAC10 laccase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026400 [exp] 595 / 0 AT2G30210 553 / 0.0 laccase 3 (.1) Lus10026401 [exp] 594 / 0 AT2G30210 518 / 0.0 laccase 3 (.1) Lus10007531 [exp] 578 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10017427 [exp] 575 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10009841 [exp] 565 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10040957 [exp] 561 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10007532 [exp] 548 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10017426 [exp] 539 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10002227 [exp] 436 / 3e-148 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152700 [exp] 668 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 650 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.010G183600 [exp] 594 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 590 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 564 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 556 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.004G156400 [exp] 444 / 3e-151 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.007G023300 [exp] 442 / 2e-150 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.006G094100 [exp] 437 / 1e-148 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.001G206200 [exp] 432 / 2e-146 AT5G09360 796 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10042249 pacid=23153482 polypeptide=Lus10042249 locus=Lus10042249.g ID=Lus10042249.BGIv1.0 annot-version=v1.0 ATGATTTCATCGCATGGAGTGAGGCAGCTCCGAAATCCGTGGGCTGATGGTCCGGAGTATGTAACTCAATGTCCAATCCAGCCAGGAAGAAGCTACACTT ACCGCTTCACTATCCAGAACCAGGAAGGCACACTGTGGTGGCATGCTCACAGCAAATGGCTCCGAGCCACCGTTCATGGAGCCCTCATCATCCGCCCGAA AAAGGGTTCTTCATATCCTTTCCCAACCCCCAAGAGAGAATTCCCCATCATTCTAGGAGAGTGGTGGGACCGGAATCCTCAAGACGTTCTGAAGCTGTCA CAGTGGACAGGAGCAGCAGCAAATGTTTCTGATGCCTACACCGTTAACGGCCAGCCTGGTGATTTCTACAGATGCTCCAATAAAGGTCTTCCCTTTCCGT TCTTTCCAAGCTACCACCTTCTTAAAACTCCTGTAACTAACAATTCCACTAACTTTTTGATCTGGTCAAAATGCAGAAACAGTGAAGGTCCCAGTGGTTG CAGGGGAAACAGTACTCCTCAGAATCATAAATGCTGCAATGAACCAAGAACTCTTCTTTTCGGTGGCAAACCACAAGCTCACTGTCGTGGAAGCCCTGTT GTGGAAGCCGATGCTTCCTACACAAAGCCTTTCACAACTTCTGTCATAATGGTTGGCCCTGCACAGACAACTAATGTTCTCCTGAAAGCCGACCAGACCC CTGGCCGATATTACATGGCAGCTCGAGCTTATCAGACAGCACAGAACGCAGCTTTCGACAACACCACCACAACTGCAATCCTCGAATACAAATCTACGAA AGGAAGGGCCTCTCCGGTTCTGCCTCAACTCCCGGCCTTCAATGACACCAACACTGCTAGGGCATTCACTTCCCAAGTCAGGAGCCTTAAATCCAATGTG AATGTACCCAAAAAGATCGACAAATCCTTGTTCTTCACAGTCGGGCTGGGCCTGAACAACTGTACCAATCCGAACAGCCCTCGCTGCCAGGGTCCAAACG GCACCAGATTCACTGCCAGCATCAACAATGTTTCGTTCGTGTTCCCCAGGAGGAATTCCCTGATGCAAGCTTATGTCCAGGGTCAGCCAGGGATCTTCAC CACTGACTTCCCTTCTTCACCTCCGGTGAAGTTCGATTACACAGGGAATGTGAGCAGGGGATTATGGCAGCCTAGCCGAGGGACTAAGCTTGTTAAGCTC AAGTATGGTGACAATGTGCAGATAGTGTTGCAGGACACCAGCATCGTGACGACTGAGGATCACCCCATGCATCTCCATGGCTACTCTTTCTACGTTGTTG GGATGGGTACCGGAAACTTCAATGCAGCAACTGATACTGCTAACTTCAACCTCGTCGATCCTCCACATAGAAACACCATTGGAACCCCTCCCGGGGGGTG GGTCGCCATAAGATTTAAGGCTGATAATCCAGGAATCTGGCTGCTGCATTGCCACATTGATTCGCATTTGGGCTGGGGATTGGCGACGGCATTACTTGTT GAGAATGGAGTCGGGAAATTGCAGGCTGTTCAGGCCGCACCACTGGATCTGCCCAGATGTTAG
AA sequence Show only first row Show all	>Lus10042249 pacid=23153482 polypeptide=Lus10042249 locus=Lus10042249.g ID=Lus10042249.BGIv1.0 annot-version=v1.0 MISSHGVRQLRNPWADGPEYVTQCPIQPGRSYTYRFTIQNQEGTLWWHAHSKWLRATVHGALIIRPKKGSSYPFPTPKREFPIILGEWWDRNPQDVLKLS QWTGAAANVSDAYTVNGQPGDFYRCSNKGLPFPFFPSYHLLKTPVTNNSTNFLIWSKCRNSEGPSGCRGNSTPQNHKCCNEPRTLLFGGKPQAHCRGSPV VEADASYTKPFTTSVIMVGPAQTTNVLLKADQTPGRYYMAARAYQTAQNAAFDNTTTTAILEYKSTKGRASPVLPQLPAFNDTNTARAFTSQVRSLKSNV NVPKKIDKSLFFTVGLGLNNCTNPNSPRCQGPNGTRFTASINNVSFVFPRRNSLMQAYVQGQPGIFTTDFPSSPPVKFDYTGNVSRGLWQPSRGTKLVKL KYGDNVQIVLQDTSIVTTEDHPMHLHGYSFYVVGMGTGNFNAATDTANFNLVDPPHRNTIGTPPGGWVAIRFKADNPGIWLLHCHIDSHLGWGLATALLV ENGVGKLQAVQAAPLDLPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	1.0	0.9703
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	1.7	0.9522
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	2.4	0.9593
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	3.2	0.9475
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	3.5	0.9496
AT5G14230			unknown protein		Lus10036990 [exp]	3.7	0.9452
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	4.0	0.9431
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	4.9	0.9470
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	5.2	0.9319
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	7.2	0.9072

Compare expression of checked genes

Lus10042249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.