Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07130 213 / 3e-66 LAC13 laccase 13 (.1) AT2G30210 207 / 5e-64 LAC3 laccase 3 (.1) AT5G05390 206 / 8e-64 LAC12 laccase 12 (.1) AT2G40370 193 / 1e-58 LAC5 laccase 5 (.1) AT5G09360 189 / 3e-57 LAC14 laccase 14 (.1) AT2G38080 167 / 7e-49 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G29130 166 / 1e-48 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 162 / 4e-47 LAC17, ATLAC17 laccase 17 (.1) AT5G03260 160 / 3e-46 LAC11 laccase 11 (.1) AT3G09220 157 / 3e-45 LAC7 laccase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017427 [exp] 198 / 1e-60 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10006157 [exp] 173 / 6e-51 AT5G09360 533 / 0.0 laccase 14 (.1) Lus10041066 [exp] 172 / 7e-51 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10041067 [exp] 171 / 3e-50 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10035517 [exp] 169 / 1e-49 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 169 / 1e-49 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 168 / 3e-49 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10040697 [exp] 166 / 2e-48 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10018208 [exp] 164 / 6e-48 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152700 [exp] 235 / 9e-75 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 231 / 2e-73 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.010G183600 [exp] 205 / 2e-63 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 204 / 5e-63 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073700 [exp] 204 / 8e-63 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.008G073800 [exp] 202 / 4e-62 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.005G200600 [exp] 181 / 5e-54 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 179 / 1e-53 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.005G200500 [exp] 178 / 4e-53 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 171 / 1e-50 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10042251 pacid=23153536 polypeptide=Lus10042251 locus=Lus10042251.g ID=Lus10042251.BGIv1.0 annot-version=v1.0 ATGGAGGTTCTCCGAAATCCAAGAGCCAAGCAATCCTCTGGCAGCACCCATCTCTGCTTACTTGGCCTTGATTTGGTCTTGACATATGGTTTCTTGGCTT CATTCTCGGAAGCTAAAGTTCACTACCATGATTTTGTCGTCTGTGGCCATATTTGTCGATTTTCTAACCTTCTTTTGTCTCATGTTATATCTATACAAGT AAACATTTTGTTGAGCATGATACAAATTGAAGCAAAACCACTGAAGAGGCTGTGCAGAACTCACAACACCATCACAGTTAACGGGCAGTTCCCAGGGCCG ACACTGGACGTTCGAAATGGGGACACACTTGACATCAGAGCCATCAACAAAGCTCAACATAACATCTCCCTCCATTGGCATGGAGTGACGCAGCTCCGAA ATCCGTGGGCTGATGGTCTGGAGTATGTAACTCAATGTCCAATCCAGCCAGGAAGAAGCTACATTTACCGCTTAACTATCCAGAACCAGGAAGGCACACT GTGGTGGCATGCTCACAGCAAATGGCTCCGAGCCACCGTTCATGGAGCCCTCGTCATCCACCCGAAAAAGGGTTCTTCATATCCTTTTCCAACGCCAAAG TGA
AA sequence Show only first row Show all	>Lus10042251 pacid=23153536 polypeptide=Lus10042251 locus=Lus10042251.g ID=Lus10042251.BGIv1.0 annot-version=v1.0 MEVLRNPRAKQSSGSTHLCLLGLDLVLTYGFLASFSEAKVHYHDFVVCGHICRFSNLLLSHVISIQVNILLSMIQIEAKPLKRLCRTHNTITVNGQFPGP TLDVRNGDTLDIRAINKAQHNISLHWHGVTQLRNPWADGLEYVTQCPIQPGRSYIYRLTIQNQEGTLWWHAHSKWLRATVHGALVIHPKKGSSYPFPTPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	0	1
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	3.0	0.9332
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	7.2	0.9072
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	8.5	0.9064
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	9.5	0.8973
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	14.8	0.8986
AT5G49960			unknown protein		Lus10036585 [exp]	15.9	0.8682
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	16.4	0.8986
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006636 [exp]	20.5	0.8159
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	21.4	0.8819
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	21.4	0.8428

Compare expression of checked genes

Lus10042251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.