Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30210 348 / 2e-117 LAC3 laccase 3 (.1) AT5G07130 332 / 5e-111 LAC13 laccase 13 (.1) AT5G05390 327 / 6e-109 LAC12 laccase 12 (.1) AT5G03260 237 / 3e-74 LAC11 laccase 11 (.1) AT2G38080 225 / 1e-69 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 223 / 1e-68 LAC10 laccase 10 (.1) AT2G40370 223 / 2e-68 LAC5 laccase 5 (.1) AT5G58910 218 / 3e-67 LAC16 laccase 16 (.1) AT3G09220 210 / 9e-64 LAC7 laccase 7 (.1) AT5G60020 191 / 1e-56 LAC17, ATLAC17 laccase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026400 [exp] 464 / 5e-165 AT2G30210 553 / 0.0 laccase 3 (.1) Lus10042249 [exp] 430 / 5e-150 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10026401 [exp] 352 / 4e-122 AT2G30210 518 / 0.0 laccase 3 (.1) Lus10017427 [exp] 290 / 2e-94 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10007531 [exp] 287 / 3e-94 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10026512 [exp] 250 / 4e-79 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 237 / 3e-74 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 237 / 3e-74 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10007532 [exp] 235 / 3e-74 AT2G40370 804 / 0.0 laccase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152700 [exp] 352 / 1e-118 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 341 / 3e-114 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.008G073700 [exp] 322 / 4e-107 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183600 [exp] 308 / 2e-101 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.004G156400 [exp] 253 / 3e-80 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.007G023300 [exp] 250 / 4e-79 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.009G102700 [exp] 239 / 3e-75 AT5G03260 881 / 0.0 laccase 11 (.1) Potri.006G094100 [exp] 238 / 1e-74 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.006G087500 [exp] 234 / 5e-73 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.006G097000 [exp] 231 / 6e-72 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10042252 pacid=23153673 polypeptide=Lus10042252 locus=Lus10042252.g ID=Lus10042252.BGIv1.0 annot-version=v1.0 ATGAACCAAGAACTCTTCTTTTCGGTGGCCAACCACAAGCTCACTGTTGTGGAAGCTGATGCTTCCTACACAAAGCCTTTCACAACTTCTGTCATAATGG TTGGCCCTGCCCAGACAACTAATGTTCTCCTGAAAGCCGACCAGACCCCTGGCCGGTATTACATGGCAGCTCGAGCTTATCAGACAGCACAGAACGCAGC TTTCGACAACACCATCACAACTGCAATCCTCGAATACAAATATACGAAAGGAAGGCCCTCTCCGGTTCTGCCTCAGCTCCCAGCCTTCAATGACACCAAC ACTGCTAGGCCATTCACTTCCCAAGAGGAATTCCCTGATGCAGCCTATGTCCAGGGTCAACTGGGAATCTTCACCACTGACTTCCCTTCTTCACCTCCAG TGAAGTTCGATTACACGGGGAATGTGAGCCGGGGATTGTGGCAGCCTAGTCGAGGGACCAAGCTTGTTAAGCTCAAGTATGGTGACAATGTGCAGATAGT GTTGCAGGACACCAGCATCGCGACGACTGAGGATCACCCCATGCATCTCCATGGCTACTCTTTCTATATTGTTGGGATGGGTACCGGAAAATTCAATGCA GCAACTGATACTGCTAACTTCAACCTCGTCGATCCTCCACATAGAAACACCATTGGAACCCCTCCCGGGGGGTGGGTCGCCATAAGATTTAAGGCAGATA ATCCAGGAATCTGGCTGCTGCATTGCCACATTGATTCGCATTTGGGCTGGGGTTTGGCGACGGCATTACTTGTTGAGAATGGAGTGGGGAAATTGCAGGC TGTCAGGCTGCACCACTTTATCTGCCCCGTTGTTGAAGATCTCAGAACAAAGAATCTATCATTCTGA
AA sequence Show only first row Show all	>Lus10042252 pacid=23153673 polypeptide=Lus10042252 locus=Lus10042252.g ID=Lus10042252.BGIv1.0 annot-version=v1.0 MNQELFFSVANHKLTVVEADASYTKPFTTSVIMVGPAQTTNVLLKADQTPGRYYMAARAYQTAQNAAFDNTITTAILEYKYTKGRPSPVLPQLPAFNDTN TARPFTSQEEFPDAAYVQGQLGIFTTDFPSSPPVKFDYTGNVSRGLWQPSRGTKLVKLKYGDNVQIVLQDTSIATTEDHPMHLHGYSFYIVGMGTGKFNA ATDTANFNLVDPPHRNTIGTPPGGWVAIRFKADNPGIWLLHCHIDSHLGWGLATALLVENGVGKLQAVRLHHFICPVVEDLRTKNLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	0	1
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	1.0	0.9616
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	2.8	0.9514
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	3.0	0.9332
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	4.2	0.9482
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039812 [exp]	4.9	0.9251
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	4.9	0.9470
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	6.3	0.9318
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	7.1	0.9435
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	7.3	0.9400
AT5G49960			unknown protein		Lus10035805 [exp]	8.0	0.9335

Compare expression of checked genes

Lus10042252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.