Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23350 104 / 2e-25 Protein of Unknown Function (DUF239) (.1) AT5G18460 102 / 2e-24 Protein of Unknown Function (DUF239) (.1) AT4G23360 100 / 4e-23 unknown protein AT4G23390 97 / 1e-22 Protein of Unknown Function (DUF239) (.1) AT4G23370 95 / 2e-21 unknown protein AT2G44240 92 / 5e-21 Protein of Unknown Function (DUF239) (.1) AT2G38255 91 / 6e-21 Protein of Unknown Function (DUF239) (.1) AT4G15050 92 / 1e-20 Protein of Unknown Function (DUF239) (.1) AT2G27320 89 / 4e-20 Protein of Unknown Function (DUF239) (.1) AT2G44220 88 / 2e-19 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026382 [exp] 210 / 8e-63 AT2G30100 580 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10002231 [exp] 143 / 7e-40 AT4G15050 197 / 2e-59 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 97 / 2e-22 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 92 / 1e-20 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 89 / 1e-19 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 89 / 2e-19 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 88 / 2e-19 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 88 / 2e-19 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 87 / 7e-19 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024100 [exp] 96 / 4e-22 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 92 / 6e-21 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 91 / 2e-20 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 88 / 3e-19 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.001G233000 [exp] 87 / 6e-19 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 86 / 1e-18 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 86 / 1e-18 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 86 / 1e-18 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 81 / 8e-17 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 76 / 4e-15 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10042273 pacid=23153694 polypeptide=Lus10042273 locus=Lus10042273.g ID=Lus10042273.BGIv1.0 annot-version=v1.0 ATGAGGTTTGGAGTATACGGAATGACAGAGACGCATTTTTGTGGAGGGTCAAGTTGGGCAGAAGGAAGGAACGAGGAAGCAAGTGTGAGCCCAGCTAGAG ACAGAGGTCACTGGCAAGGGGCTAAGGTCAATCCATCTCTATATCCAGACAATTTACCGCATCTATTTATATACACCAATACCCAACATTCACATTGTTA CAACACATATTGTCCCGGTTTCATCCTCACAAGTTCAAAAATACCTGTAGATGCGCTTCTTACACCATATAATGTTATTGGAGGAGGACACTTATATGAG AAGCGCTATTATATTGGCAAGGACATGAAAACCGGAAACTGGATTTTTAGGTTGACAGATAACAATGAAACCATGGGATATTGGCCTAAAGAGATATTTA CAAGTTTAGCGGATTCAGCGGATTATATAGAATGGGGAGGCGAAGTGTATAGTCCATCAGGCATCACTCCACCACCAATGGGCGCAGGACACTGGCCTAC TCAGGGTCCTTATCATGAAGGAGACCAATCCAAAAACACGGCAGCTTTTCTCGTTATTATCGCCTTCGTCATATCTTGTTTCACTGTCATCATATCTACT TTGTTGATCTGCAAACTAGCCAGATTCCTCCCCGGCAACAACCGTCGTAAGTGGGCAGTGAGGCACCTTATTCCCAGCTTCCGACAAATTAGTTACAGGG ACGCCACTGAGCTGATAGCCGGTCGGTTCGAAGCCACCCATTGCGCGTTGTGCCTCGACCGGTTTGAGGACGAAGAAGAAACGGTGACTGTGCTGCCCGG TTGCAACCACATTTCCCGTCCCAACTGCATAATGGACTGGTTGCTCAAGAGTGCCAGGTTATCCACCTTCCCCAATTACCCCATTTACAAATCTACCATA GTACTATCCGCCTCTAGCAATTAG
AA sequence Show only first row Show all	>Lus10042273 pacid=23153694 polypeptide=Lus10042273 locus=Lus10042273.g ID=Lus10042273.BGIv1.0 annot-version=v1.0 MRFGVYGMTETHFCGGSSWAEGRNEEASVSPARDRGHWQGAKVNPSLYPDNLPHLFIYTNTQHSHCYNTYCPGFILTSSKIPVDALLTPYNVIGGGHLYE KRYYIGKDMKTGNWIFRLTDNNETMGYWPKEIFTSLADSADYIEWGGEVYSPSGITPPPMGAGHWPTQGPYHEGDQSKNTAAFLVIIAFVISCFTVIIST LLICKLARFLPGNNRRKWAVRHLIPSFRQISYRDATELIAGRFEATHCALCLDRFEDEEETVTVLPGCNHISRPNCIMDWLLKSARLSTFPNYPIYKSTI VLSASSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23350			Protein of Unknown Function (D...		Lus10042273 [exp]	0	1
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	5.7	0.9276
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	9.1	0.9092
					Lus10006918 [exp]	11.1	0.9087
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	12.8	0.9087
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	14.3	0.9087
AT1G04670			unknown protein		Lus10004041 [exp]	15.7	0.9087
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	16.9	0.9087
					Lus10007508 [exp]	18.1	0.9087
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	18.6	0.8821
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	19.2	0.9087

Compare expression of checked genes

Lus10042273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.