Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18330 165 / 3e-47 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT5G17300 139 / 2e-37 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT3G10113 129 / 9e-34 MYB Homeodomain-like superfamily protein (.1) AT5G37260 125 / 3e-33 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT1G01060 124 / 8e-31 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT2G46830 123 / 2e-30 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT3G09600 101 / 4e-24 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT1G01520 97 / 1e-22 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT4G01280 97 / 2e-22 MYB Homeodomain-like superfamily protein (.1.2) AT5G52660 96 / 5e-22 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026365 [exp] 671 / 0 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 325 / 3e-108 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10031322 [exp] 321 / 1e-106 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10030184 [exp] 120 / 4e-30 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 120 / 3e-29 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 120 / 4e-29 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10007914 [exp] 102 / 4e-24 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 102 / 1e-23 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 101 / 1e-23 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030400 [exp] 232 / 2e-71 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 231 / 5e-71 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 185 / 2e-53 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.017G144800 [exp] 184 / 3e-53 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.014G106800 [exp] 122 / 6e-30 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 120 / 2e-29 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.016G083900 [exp] 101 / 7e-24 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 100 / 9e-24 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 99 / 1e-22 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 98 / 1e-22 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042292 pacid=23153551 polypeptide=Lus10042292 locus=Lus10042292.g ID=Lus10042292.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCAGGATGAAGTTCAAGAAGCTCTACCTAACCAAGTCGATGGAGGTGAACAAATGATGGAAATGAATTCATTTGGGAGTCAGCAGCTGC CCAAGGCAAGGAAGCCTTACACTGTCTCCAAGCAGAGGGAGAAGTGGACTGAAGAGGAACACCAGAAGTTCCTCGAAGCTCTGAAGCTATATGGCCGTGG CTGGCGTAAGATTCAAGAACATGTAGGCACCAAAACTGCTGTTCAAATCCGAAGCCACGCCCAGAAGTTCTTCTCCAAGGTTGTCAGAGAGACGACTGTC GGCGCAGAGAGCTCCATTAAGCCAATTGAGATACCCCCTCCTCGTCCAAAGAGGAAGCCTTTGCACCCTTATCCTCGTAAATGTGTCGATGGTCTCTTGG ATCAGTTCGAAAGATCACAGTCCCCAAATTTATTGGGTATTGAGAAGGAAAACCGTTCGCCAACTTCTGTATTGGAGCCTCAAAATGGTTGTTCCTCATC ATCCACCAGTGACTTGCAGTCCTCCAGCATGCTACTACCAAATGAGAAAGATAACGAACAGATCATGTCAAATTCATCTCAACGTGAAGGAAATGGATCC TCATCACCATTGGACGACTCGGCACCAGAAGAATTACCCGTGGAATTGCAGGCCAGTTTGAAGACTGCAGCATTTGCTGAAAATGAGAGAGCTGTGGTGC CAGTCACCCGGTCAAGGAGCTTCAAGCTTTTTGGACGGACAGTGTTGGTTCCGGATTCCGAGAAGGCATCTAGCCAACAGGATTGCATAGGCGTGAAGTT GTCCCTCGGGTTGGTCAATCCTGACTCAAACCGGTTGCTGTCCGATCCGCAGGCTTCACGAACCAAAGATAAGCTGGAAAATACTGCAGAAGCCAACTGT TCACTATCACCATGGGGTTTATCCCACAGTTCATTGCATAATTACTTGCAACAACCAATTACGGGAAACATTTTGAAGGAAAGGGAAGCTGTAGACGAAA CGTTTTGCACCGGCTCGGATGCCGGTTCAACAAATGAAGTAGAGAACAGAGAGAAATCCATGGACGTAGCGGATTCACAGCCTGAAGAAAGATTATCCAG TGTAAGAATCTATTCTAGTAGGGGTTTCATGCCATACAAGAGATGTTTAGCCGAGAGGGACATGACATCAACATTAGCTGCATCAGAAGAACGAGACCAG CAACGATCTCGAGTATGCTCTTAG
AA sequence Show only first row Show all	>Lus10042292 pacid=23153551 polypeptide=Lus10042292 locus=Lus10042292.g ID=Lus10042292.BGIv1.0 annot-version=v1.0 MAASQDEVQEALPNQVDGGEQMMEMNSFGSQQLPKARKPYTVSKQREKWTEEEHQKFLEALKLYGRGWRKIQEHVGTKTAVQIRSHAQKFFSKVVRETTV GAESSIKPIEIPPPRPKRKPLHPYPRKCVDGLLDQFERSQSPNLLGIEKENRSPTSVLEPQNGCSSSSTSDLQSSSMLLPNEKDNEQIMSNSSQREGNGS SSPLDDSAPEELPVELQASLKTAAFAENERAVVPVTRSRSFKLFGRTVLVPDSEKASSQQDCIGVKLSLGLVNPDSNRLLSDPQASRTKDKLENTAEANC SLSPWGLSHSSLHNYLQQPITGNILKEREAVDETFCTGSDAGSTNEVENREKSMDVADSQPEERLSSVRIYSSRGFMPYKRCLAERDMTSTLAASEERDQ QRSRVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	0	1
AT5G06980			unknown protein		Lus10026150 [exp]	2.0	0.8745
AT3G12320			unknown protein		Lus10008671 [exp]	2.0	0.8814
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	3.9	0.8184
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	4.2	0.8625
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	6.3	0.8262
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	7.3	0.8145
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	7.5	0.8077
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	8.4	0.7904
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	8.8	0.8080
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	8.8	0.7897

Compare expression of checked genes

Lus10042292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.