Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34430 445 / 3e-140 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 171 / 1e-43 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 130 / 7e-32 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 92 / 4e-19 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT4G16420 79 / 7e-15 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT3G07740 71 / 2e-12 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026334 [exp] 1498 / 0 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10023583 [exp] 866 / 0 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 838 / 0 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10016043 [exp] 155 / 9e-40 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10029695 [exp] 154 / 1e-38 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 150 / 5e-37 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10025165 [exp] 147 / 2e-36 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 121 / 2e-28 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 120 / 4e-28 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114900 [exp] 716 / 0 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 695 / 0 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 174 / 8e-45 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 174 / 2e-44 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.015G100400 [exp] 133 / 3e-32 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 132 / 3e-32 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.006G017300 [exp] 88 / 1e-17 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 88 / 1e-17 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 87 / 2e-17 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042329 pacid=23153890 polypeptide=Lus10042329 locus=Lus10042329.g ID=Lus10042329.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAAATGGAGGGTACACCGGTGACAGCTGATTCACCGGCGGCAGCCGAACTAGCATCGTCACGCCGCCGAGCTGGAGGGATGAAAAAAAGGA AAGCCAACTCAATGTCGACATCAACCTTCTCCTCCTCCACACCTTCGAAGCGGATGACTCGAGAGAGAGCGACCATGTCGCTCTTCCAGTCTCAATTTCA TGATGGCCCCTTGACAAGGGCTTCCCGACACACCTCAACTACTTCCGCTTCTTCAACTGGTAACCCGACGGCTGCTCGTGGCTTGAAGCTCGAGGAGAAG GAAAGGGTTGCTTTGGCGGCGGCGGCCACGGCGACGGCAGCTGCTGCAGAGGAGGAGCGGCTGAAATTGGAGGATTTGGAGAACAAGATTGAGGCAGAGT TTGAAGCCATTAGATCTCGGGATTCGAACGCTCACGTGGTACCTAATCACTGCGAGGATGGAGTTTTCCAGATAGTAGTGATTCTGTTTCTCAAGATTTA TCATGAACTTACTAGGCAAAGAAAAGACGAGTTCTTTTTCAGACACCGTATGCAGCCTTTCTTGGTGACAGGGTGGTTTTCATGGAAAAAAGTTCACCTT TTGGAGGAGCGAGCATTGCCTACTTTCTTTAATGGGAAATCCCAAAGTCGAACACCTGACACATACTTGGAGATTCGCAATACGATCGTTAAGAAGTTCC ATTCGAACCCAAATGAACAGATTGAGTTGAAAGATTTATCGGATCTTGAAGTTGCAGACACTGATGCGAGGCAAGAGGTGCTAGAGTTCTTGGACTATTG GGGATTGATTAATTTCCATCCTTTTCCAGAATCGGATGCTTCTGGAAATTCTTGGGGTGATATACCTACAGAGGATTCATTGCTTGAGAAGTTATTCCAG TTTGGACCTGTTCCGTCAAGTCCAAATGTCGTTCCTAAGCCTAGTTTGGCAACTACGGCTGTATCATCTAGTTTGTGTCCAGATCCTGCAATTGCAGAAG AGTTGTTGCGGCCAGAGGGACCATCAGTAGAGTATCATTGTAATTCTTGTTCAGCTGATTGCTCTCGGGAACGTTACCACTGCCAAACGCAGGCAGATTA TGATTTGTGTGCTGATTGCTTTAGTAATGGGAAGTTTGACCCGGACATGTCATCTTCAGATTTCATTCTCATGGAGCCTGCCGAGGCTCCTGGTCTAAGT GGAGGGAAGTGGACGGATCAAGAGACCCTGCTTCTCCTCGAGGCATTGGAAATTTTCGAAGGAAAAGAATGGAATGAGATCGCGGAGCATGTTGCAACAA AATCAAAAGCTCAGTGTATCTTGCACTTTGTTCAAATGCCAATTGAGGATGCTTTTTTTGATTGTGATGATATGGAGGACAGTCAAAAGGAAATAGCTGA CACAGGTGCAACCAATGAAACTGCCCCTGAAACAAGTGATGTTAAAATAGATTCCAAGGAGGACCAGAGTCGAATGTCTCCAATGGAGAATTCAAACCCA GAAGATACCGAAGAAATGAATGATATTTCTGAGAATGACAGCGAAGGAAAGAAAGCTGATCAAATTTCAAAACCAGATACTGTCGAAGGGAAGCAAGGTG ATCAAGTTTCAAAACCAGATACTGTTGAAGCGAAGCAAGCTGATCAAGTTTCAAAACCAGATACTAATGAGGGGAAGCCTACTTCGGAAACTTCAAAACT AGATGCTGGTGAGATTTCCGGTGAAGATGTTGCACTAAGAGCTCTAACAGAAGCATTTGATGCTGTCAGTTATGCATCTAATTCTGGCTTATCATTTGCT GAAGTTGGAAATCCGGTCATGGCCTTGGCAGCATTTTTTGTGAGATTGGTTGGAGGTGATGTGGTTTCTGCTTCATCTCGTAATTCTCTCAAGTCATTAT CAAGCAGTTCTCCTGGAGTGCAGCTTGCACTACGACATTGCTTTCTTTTGGAAGATCCACCAGATAGTGGAAATGAAAAAGGAGATCGTGACTGTGCTGA GGACACTGAACAGAATGCTCCCATAGACAACCAGGACAAGAAGAACCAGTCGGCAAGTGGCCCGTGTAATATCGAAAGCAAGGTTTCTTGTGATGAAGAA AACAAATTAGTAGATTCCTCGAATGATGAATCCAAGGAAAAGGAAAAGACTATAAATGAAGTAGGTCTCGGAGACATTCATGACGAAAGTGATACTTATA AGCCCGAGGATCCAAGCAATTCTGACCAACAACACAACACGATGAATGAATTATCCTCACCAGAGTCTGTGAAGGAGCATCAAGAAGGATCTTCTGCTGT TGTACGTTCAGAGCTTAAAGAAATGGGTGGTAATGTAGAGATGGTCTCTGACTCTAGAACTTCAGAGAACATGCAATCATCTACGTCACCCGAAGAGCCA GCTCACGCTGGGGAGGTGCAAAATGATGCAGGCATTCTGTCAGATGCTCTTCCTGTAGATAAGAATGAGATTGAGGATCAAGAAAAACCAAGTTTTACCG CAGATAACGTTGAACCAGTAGTGATCCCGAAGGATATTGACAAACTAAAGCGTGCTGGAGTAGCTGCATTGTCCGCAGCTGCCGTGAAGGCAAAGCTTCT TGCATATCAAGAGGAGGACCAAATCCGCCAACTTGCTGCAGCTCTCGTAGAAAAGCAGTTACACAAACTTGAAATGAAGCTGGCTTTCTTCAATGATATG GACACTGTGATTATGAGGGTCAAGCAGCAACTGGACAGATGCAGGCAGAGACTTTACCATGATAGAACACAAATAATTGCAGCTCGCCTTGGTTTTGCAG CTTCGTCATCTAATCCTGGCCAACCCAGTCTAACTGGTAACAGACTTGCAATGAACATCGCTGGTGGATTTCCGAGGCCACCTATAGGCTTCGCTTCCCA AAGGCCGTCAATTTCGGGACCAGCACTGGGAGCGGCGGTGACCAGTGGTTCTAACCCTATTAACCCTAGCGGGGGTGCGAATTCAATTAGGCCTTCCAGC CAGGATACACTCTCTTCAGTTGGTTCAAAGTAG
AA sequence Show only first row Show all	>Lus10042329 pacid=23153890 polypeptide=Lus10042329 locus=Lus10042329.g ID=Lus10042329.BGIv1.0 annot-version=v1.0 MESKMEGTPVTADSPAAAELASSRRRAGGMKKRKANSMSTSTFSSSTPSKRMTRERATMSLFQSQFHDGPLTRASRHTSTTSASSTGNPTAARGLKLEEK ERVALAAAATATAAAAEEERLKLEDLENKIEAEFEAIRSRDSNAHVVPNHCEDGVFQIVVILFLKIYHELTRQRKDEFFFRHRMQPFLVTGWFSWKKVHL LEERALPTFFNGKSQSRTPDTYLEIRNTIVKKFHSNPNEQIELKDLSDLEVADTDARQEVLEFLDYWGLINFHPFPESDASGNSWGDIPTEDSLLEKLFQ FGPVPSSPNVVPKPSLATTAVSSSLCPDPAIAEELLRPEGPSVEYHCNSCSADCSRERYHCQTQADYDLCADCFSNGKFDPDMSSSDFILMEPAEAPGLS GGKWTDQETLLLLEALEIFEGKEWNEIAEHVATKSKAQCILHFVQMPIEDAFFDCDDMEDSQKEIADTGATNETAPETSDVKIDSKEDQSRMSPMENSNP EDTEEMNDISENDSEGKKADQISKPDTVEGKQGDQVSKPDTVEAKQADQVSKPDTNEGKPTSETSKLDAGEISGEDVALRALTEAFDAVSYASNSGLSFA EVGNPVMALAAFFVRLVGGDVVSASSRNSLKSLSSSSPGVQLALRHCFLLEDPPDSGNEKGDRDCAEDTEQNAPIDNQDKKNQSASGPCNIESKVSCDEE NKLVDSSNDESKEKEKTINEVGLGDIHDESDTYKPEDPSNSDQQHNTMNELSSPESVKEHQEGSSAVVRSELKEMGGNVEMVSDSRTSENMQSSTSPEEP AHAGEVQNDAGILSDALPVDKNEIEDQEKPSFTADNVEPVVIPKDIDKLKRAGVAALSAAAVKAKLLAYQEEDQIRQLAAALVEKQLHKLEMKLAFFNDM DTVIMRVKQQLDRCRQRLYHDRTQIIAARLGFAASSSNPGQPSLTGNRLAMNIAGGFPRPPIGFASQRPSISGPALGAAVTSGSNPINPSGGANSIRPSS QDTLSSVGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	0	1
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	1.0	0.9735
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	1.4	0.9563
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	1.7	0.9481
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	2.0	0.9472
AT3G14120			unknown protein		Lus10015675 [exp]	5.7	0.9336
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	6.0	0.9429
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	6.3	0.9162
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	7.3	0.9169
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	8.9	0.9449
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	9.7	0.8820

Compare expression of checked genes

Lus10042329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.