Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02480 965 / 0 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 758 / 0 AAA-type ATPase family protein (.1) AT4G24790 338 / 7e-100 AAA-type ATPase family protein (.1.2) AT5G45720 307 / 6e-88 AAA-type ATPase family protein (.1.2) AT4G18820 306 / 7e-87 AAA-type ATPase family protein (.1) AT1G63160 56 / 1e-07 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026270 [exp] 1322 / 0 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10033035 [exp] 332 / 9e-98 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10013665 [exp] 330 / 2e-96 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10005422 [exp] 313 / 2e-89 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 312 / 2e-89 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 306 / 8e-87 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 298 / 3e-84 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10018144 [exp] 62 / 1e-09 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 62 / 2e-09 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230300 [exp] 1142 / 0 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 1128 / 0 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 365 / 2e-108 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G088100 [exp] 332 / 1e-96 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G061700 [exp] 317 / 7e-90 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 314 / 5e-89 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.002G081200 [exp] 61 / 2e-09 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.011G023800 [exp] 45 / 0.0004 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10042401 pacid=23153731 polypeptide=Lus10042401 locus=Lus10042401.g ID=Lus10042401.BGIv1.0 annot-version=v1.0 ATGGCGTCAGAGCTGCGAGTTGGCGATCCAAGCAGCCTCCATCTTCGCAAGGAGCTCACTCAAATCAGGAAGGCATCTCGCGTCCTCCGTGACCCTGCTA CCACCACCGCCACTTCCTCCTCCTCCTCCTTCTACAGACCTCCTCTCCCTAATCCTTCTTCCTCTTCCCCTAGATCTGCTCCTCCTCCTCCTCTTACCAA CCCTCCTTCCAATCGCCCAATCTTCCTCCACAACTGGAAGATTCCTCACAATCCTGATCCCGCCGCTGATGACTATTACCCCGATGACAACAACAGCCTC GGCGACGACGACGACGACGAAGCTGCTGCAGCTTTGGACAGCGATGCTCATCTCTCTTCCTCCTCCGCTACTACTTCCAACATTCTCCGATGCCGCGATG CTGCTGCTGCTCTCGTCTCCCCTTCCATTACTCTCAAGAAGCATCATCGGAGCGGTAAGAAAACTGTTCCTCTTTCAGATGTTTTGTCTAGATACCAGCA GCACCGACGCCACCACCCTAACCTCAACAATTTGACCCCGCTACTTAGAACAACGAATCGTCGTCCTTTGCTCTACCATTACTCCGATTACACCACCGAT GACTGCACTCATTCCGAGGATTTGTTGAGGAAGTTCTCTTCCTCTGCTTCCCCGTTGCTTTTGAAGCTCAAGCATAAGAACTGGTCCCGTTCCCCGTCTA CATTCATGAGGAAGACGACCAGTGTAAAGGATCACGACTCTTCTTACTCCTACAACACCCCTGCATTGTCCACTAGCTCCTACAATAGGTACTATAATCG AAACCCTAGCACCGTTGGATCCTGGGATGCCACCACCGCTACTTCCCTCAACGACGGGGATCATCACGATGATGATGAGAATGACGAAGATGATGATGAC CATTTGGATCATTTGCCTGGTAGCAGAGGGTGTGGTATCCCTTGCTACTGGTCCAAGAAGGCTGCTAGTTGTTGCTCCCCTTCTCTTTCCGATACTTTGA GGAGGAAAGGAAGCCGCATTCTCTGCGGTAGTCAGTCCATCGGCCATCATCATCGATCCAGGCGTTCCTCCTCATCGGTGTCTAATAAACGGAGGATTGC TTCGAGAAGTGCTCAGGGTGTTCTGCCTTTGCTTGCTGGCAATGGTGGTGGCAGAGGGGGTTCCTCCCTTTGTACTACTGCATGCAGTGATGATGAGCTC CATACTAACTTCGGGGAGCTTGATTTGGAGGCCCTGAGCAGATTGGATGGGAGAAGATGGTCCAACTGTAGGAGTACTGAGGAGGGACTTGAAATTGTTC CTGTTAATGGAGATCTAGAAGGGGGAGAATCTACTCCTGAGAGTATGAAAAGTTTGACTCATAAGTATAAACCAGTATTCTTCAGTGAATTGATAGGACA GAACATCGTTGTTCAATCACTTAGTAATGCGATTACTCGGGGAAGGATTGCCCCTGTCTATCTTTTCCAGGGTCCTCGTGGAACTGGGAAAACATCAGCA GCCAGAATCTTCAGCTCTGCTTTAAATTGTACTTCTAGCGATGTGACAAAACCTTGTGGATTCTGTTCCTCCTGCACAGACTTCATTTCTGGAAAGAGCA GATTCCTGTGGGAATTTGATGGAACCAATAAGCAAGGTGCCGATAAGATAAGGTACCTTCTGAAAAAGGTTTCTCAAGCACCCCAGTCGGGTTCTTCACA CTTTCAGGTCTTTCTCATTGATGAATGTCACTTGTTGCCTTCTAAGTTGTGGCTGGCATTCCTCAAGTTTCTTGAAGAGCCACCTCAGCGAGTTGTATTT ATATTTATAACGACGGATCCTGATAATGTGCCCCGGACTGTACAATCACGATGCCAGAAGTACCTATTTAACAAAATTAAAGATGCAGATATCATATCAA GATTGAGGAACATTTCTGCAGAAGAGAATCTGAACGTTGAGTCAGATGCACTGGATCTTATAGCTTTAAACGCAGATGGGTCACTTCGAGATGCTGAGAC AATGTTGGATCAGTTGAGTCTGTTAGGAAAGAAGATAACTACATCGTTGGTGAATGAACTTGTTGGAGTTGTCTCAGACGAGAAATTACTGGAACTTTTG GAGTTGGCGTTGTTATCAGACACGGCTGAAACAGTGAAAAGAGCCAGGGATTTGATGGACTCGGGTGTTGATCCAATGGTATTGATGTCTCAAATGGCTA GCCTTATAATGGACATCATTGCTGGAACTGGCAACATGGGAGATGGCAGATGGGGCAATTCATTTTTTGGTGGAAGAAACTTGACTGAAGCAGAAGTGGG AAGATTGAAAAATTCCTTGAAGCTTCTCTCAGAGGCTGAAAAACAACTGCAATTTTCCAGTGATCGTTCAACATGGTTCACCGCAACCCTTTTACAGCTT GGGTCAGTTCCTTCGCTAGAAATCACACACTCAAGCAGCAGTAAAAGGGGTAGCTCCAGGACCACCGAGGAAGATCATTCAACTGCCTCAAGGGAAGTGT CTGCTTACAGACGTAAATCAGATCATCAGTTTTTGCAACGAAGATCAAGTTCACCTGCTTCCTTGTATGATGTAATAAACGGAAGTTCCTGCCATCTTGA TGAATCTGAGTTGAATGGCAAAAGCACTCATAGTCGTTTGATGGGTGCCCATAGCTCGTGTAATTCACAGGATGAGAGCATGGCTGGTGATACACCATCT CAACTTAGAGACTCTGAAAAGTTGGATATTATTTGGGAGAAGTGCATCGAAAAGTGTCATTCAAAGACTCTGAGGCAGCTGCTACATTCTCATGGGAAGA TGTTGTCGATAGCAGAACTTGAAGGCATGCTAGTTGTGTATATTGCCTTTTTCGTTGAGGAGATTAAAGCCAGAGCTGAAAGATTTATGAGCAGTATCAC AAATTCCATAGAAATGGTCTTGAGACGTAATGTTGAAGTTAAAATTATCCTGGTGTCCGATGGTGACCTTCTGCTGAATGGGTCATTTGAAAGTGGTTTA CGCTCAGGAAAATTGTCAGAAGCTGGTCGGAAAGAGGCAAATCACTCGAATGCTGTGGATCGTTATTTGGAGTTACATTCACAGCAAGAGTCTCTTAGAA TGTCGAGAGGAGAATTTAGCGGGCCAGAAAGCAAGCATAAGACAGGTGAGCACTCTAAGTCATCAACTATGTTGGATGGTACAGTTCAATCAGATGCCCT GTCACCAGAATTGCGTCCCGAAACTGGTGTTTTAGACACTGAGTTGAAAGAAACCGCAGCAGAGTTACCGATGCAGAGAATAGAATCCATCATCCGGGAG CAGAGGCTAGAAACTGCATGGTTGCAGGCTGCAGAGAAAGGTACACCCGGAACTTTAAGTCGGCTGAAACCGGAGAAGAATCAGGTGCTACCGCAAGAGG GAATATACCATAATCAAAGTCAAAAGGAAGTTTCAAATTCGACGGGGTTGTCTCCCCATCAATGGGAAGATGAACTGAATCATGAACTGAAGGTTCTAAA GATGCAGGATGCAAAGGTGGTCATAAAGGATCAAATTGGTAGAAGGGCTGGCCATAATCCAATGTCACCTAGTATGTTGCATGATAACAGCATGTCAAAG AAAGAAAGCCTTGGGGGGTACGATTCAAGTTCGGCAGGCAGAGGTTGCAGCGGGCTTTTCTGCTGGAATACGCAGAAATCTCAGAGAGGAAAGGGGAAAG TTGTGATTGCGAGATCTCGAAGGAGAGTTGGAGGATTTTCATTGTTTGGGGAGTGCGGAAAGCAAAATAAGAGTGAGAACAGGGGTAGAAGAAGGTAG
AA sequence Show only first row Show all	>Lus10042401 pacid=23153731 polypeptide=Lus10042401 locus=Lus10042401.g ID=Lus10042401.BGIv1.0 annot-version=v1.0 MASELRVGDPSSLHLRKELTQIRKASRVLRDPATTTATSSSSSFYRPPLPNPSSSSPRSAPPPPLTNPPSNRPIFLHNWKIPHNPDPAADDYYPDDNNSL GDDDDDEAAAALDSDAHLSSSSATTSNILRCRDAAAALVSPSITLKKHHRSGKKTVPLSDVLSRYQQHRRHHPNLNNLTPLLRTTNRRPLLYHYSDYTTD DCTHSEDLLRKFSSSASPLLLKLKHKNWSRSPSTFMRKTTSVKDHDSSYSYNTPALSTSSYNRYYNRNPSTVGSWDATTATSLNDGDHHDDDENDEDDDD HLDHLPGSRGCGIPCYWSKKAASCCSPSLSDTLRRKGSRILCGSQSIGHHHRSRRSSSSVSNKRRIASRSAQGVLPLLAGNGGGRGGSSLCTTACSDDEL HTNFGELDLEALSRLDGRRWSNCRSTEEGLEIVPVNGDLEGGESTPESMKSLTHKYKPVFFSELIGQNIVVQSLSNAITRGRIAPVYLFQGPRGTGKTSA ARIFSSALNCTSSDVTKPCGFCSSCTDFISGKSRFLWEFDGTNKQGADKIRYLLKKVSQAPQSGSSHFQVFLIDECHLLPSKLWLAFLKFLEEPPQRVVF IFITTDPDNVPRTVQSRCQKYLFNKIKDADIISRLRNISAEENLNVESDALDLIALNADGSLRDAETMLDQLSLLGKKITTSLVNELVGVVSDEKLLELL ELALLSDTAETVKRARDLMDSGVDPMVLMSQMASLIMDIIAGTGNMGDGRWGNSFFGGRNLTEAEVGRLKNSLKLLSEAEKQLQFSSDRSTWFTATLLQL GSVPSLEITHSSSSKRGSSRTTEEDHSTASREVSAYRRKSDHQFLQRRSSSPASLYDVINGSSCHLDESELNGKSTHSRLMGAHSSCNSQDESMAGDTPS QLRDSEKLDIIWEKCIEKCHSKTLRQLLHSHGKMLSIAELEGMLVVYIAFFVEEIKARAERFMSSITNSIEMVLRRNVEVKIILVSDGDLLLNGSFESGL RSGKLSEAGRKEANHSNAVDRYLELHSQQESLRMSRGEFSGPESKHKTGEHSKSSTMLDGTVQSDALSPELRPETGVLDTELKETAAELPMQRIESIIRE QRLETAWLQAAEKGTPGTLSRLKPEKNQVLPQEGIYHNQSQKEVSNSTGLSPHQWEDELNHELKVLKMQDAKVVIKDQIGRRAGHNPMSPSMLHDNSMSK KESLGGYDSSSAGRGCSGLFCWNTQKSQRGKGKVVIARSRRRVGGFSLFGECGKQNKSENRGRRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	0	1
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	3.7	0.9052
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	3.9	0.8802
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	4.8	0.9084
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	5.2	0.9023
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	5.7	0.8998
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	7.7	0.8649
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	8.0	0.8636
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	9.5	0.8824
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	13.3	0.8775
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	14.5	0.8944

Compare expression of checked genes

Lus10042401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.