Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10310 304 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 57 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 57 / 2e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 54 / 1e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G61220 50 / 3e-07 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G06060 49 / 6e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24470 48 / 2e-06 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT5G02680 46 / 3e-06 unknown protein AT4G13250 47 / 5e-06 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G04900 46 / 1e-05 NOL NYC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026260 [exp] 398 / 3e-142 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 53 / 5e-08 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 53 / 6e-08 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 52 / 1e-07 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023644 [exp] 52 / 2e-07 AT4G13250 716 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034917 [exp] 51 / 3e-07 AT4G13250 543 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10041518 [exp] 50 / 4e-07 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 49 / 1e-06 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016748 [exp] 49 / 2e-06 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228533 [exp] 314 / 7e-109 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G127700 [exp] 56 / 4e-09 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 54 / 2e-08 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.010G056100 [exp] 54 / 3e-08 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 51 / 2e-07 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G099900 [exp] 50 / 5e-07 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G110200 [exp] 50 / 5e-07 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 49 / 2e-06 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.008G014200 [exp] 48 / 2e-06 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.007G086600 [exp] 48 / 2e-06 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042410 pacid=23153517 polypeptide=Lus10042410 locus=Lus10042410.g ID=Lus10042410.BGIv1.0 annot-version=v1.0 ATGACGGCTGCGGTTGCTGCTTCGTCTTTGGGCCTGGTGAACAAAGCCAGAGGCAGCGGAGGGAAGAAAGTGCTGATAACGGGAGTGAGCAGAGGATTGG GAAGAGCTTTAGCACAAGAATTAGCCAAGAGAGGTCATACGGTAATCGGTTGCTCTCGAACTCAAGAGAAGCTCAATTCTCTTCAATCCGAGCTGGAATC CTCCGACCGCCACCTCCTTCTCGACGCTGACATTAGGTCAGACAGCAGTGTCGGAGAGCTGGCTCGATTGGTAATGGAGAAGAAGGGCGTTCCTGATATT ATAGGTGTAGCTAATGTGTTGCGCCATTTCATCCCTTTAATGCTTCCCAACAAGCAAGGCATCATAGTTAACATCTCTTCTGGATGGGGAAGATCTGGTG CTGCACTGTGTCCAAAGGGCTTAAATAAGTTGGAAGTTGAGATGATTGAAGGAGTCAGCTTTGAATACTCTGCTCTGGATGAGAGTGTTGCACCTTATTG CGCGTCGAAATGGGCAATAGAAGGGCTGTCGAGATCAGTTGCAAAAGAGTTGCCCGATGGAATGGCAATTGTTGCGCTTAATCCAGGGGTGATCCATACA GAGATGCTGGCATCATGCTTCGGAACTTCAGCGTCTCTTTACCAGGCCCCTGATGCATGGGCAGTGAAGGCAGCCACAATGATTCTGAATCTAACAGGTG CAGACAATGGTGCTTCTCTGACCGTGCGACGAACTTAA
AA sequence Show only first row Show all	>Lus10042410 pacid=23153517 polypeptide=Lus10042410 locus=Lus10042410.g ID=Lus10042410.BGIv1.0 annot-version=v1.0 MTAAVAASSLGLVNKARGSGGKKVLITGVSRGLGRALAQELAKRGHTVIGCSRTQEKLNSLQSELESSDRHLLLDADIRSDSSVGELARLVMEKKGVPDI IGVANVLRHFIPLMLPNKQGIIVNISSGWGRSGAALCPKGLNKLEVEMIEGVSFEYSALDESVAPYCASKWAIEGLSRSVAKELPDGMAIVALNPGVIHT EMLASCFGTSASLYQAPDAWAVKAATMILNLTGADNGASLTVRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	0	1
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	2.0	0.8699
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10043048 [exp]	2.2	0.8498
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	4.0	0.8323
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	4.9	0.8511
AT3G25680			unknown protein		Lus10021714 [exp]	6.0	0.8294
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	7.3	0.8579
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	7.9	0.8540
AT5G59400			unknown protein		Lus10016531 [exp]	10.4	0.8404
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	12.2	0.8261
AT2G45990			unknown protein		Lus10014766 [exp]	14.9	0.7776

Compare expression of checked genes

Lus10042410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.