Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 176 / 2e-54 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 161 / 3e-50 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 160 / 2e-48 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 159 / 4e-48 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT5G35550 152 / 4e-45 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT1G22640 149 / 7e-44 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G27920 147 / 9e-44 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT5G40330 146 / 3e-43 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G14750 143 / 1e-42 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G52600 142 / 3e-42 MYB AtMYB82 myb domain protein 82 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003277 [exp] 197 / 8e-63 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10009130 [exp] 183 / 1e-56 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028513 [exp] 182 / 3e-56 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10028514 [exp] 169 / 2e-51 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 165 / 9e-50 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10000470 [exp] 157 / 1e-46 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 155 / 5e-46 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10006541 [exp] 148 / 6e-46 AT1G66370 118 / 7e-35 myb domain protein 113 (.1) Lus10039173 [exp] 148 / 2e-43 AT3G13540 244 / 3e-81 myb domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 181 / 3e-56 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125800 [exp] 179 / 2e-55 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G125600 [exp] 176 / 2e-54 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125900 [exp] 176 / 2e-54 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 166 / 2e-50 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.003G079100 [exp] 155 / 2e-47 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.006G221200 [exp] 148 / 2e-44 AT3G13540 169 / 6e-53 myb domain protein 5 (.1) Potri.003G144300 [exp] 150 / 3e-44 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.001G086700 [exp] 150 / 3e-44 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.006G066400 [exp] 149 / 3e-44 AT5G52600 193 / 3e-62 myb domain protein 82 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042522 pacid=23181982 polypeptide=Lus10042522 locus=Lus10042522.g ID=Lus10042522.BGIv1.0 annot-version=v1.0 ATGGGAGGAATGGCGTGGACGGAAGAAGAAGACAATTTGCTCAGGAAATGCATCGAGCAATACGGCGAAGGCAAATGGCACCGTGTTCCTTTGCTCGCTG GTTTAAACAGGTGTCGGAAAAGCTGCAGATTGAGATGGCTAAACTACCTCCGACCAAACATCAACAGAGGCAGTTTTGCTCCCGAGGAAGTCGATCTCAT CGTTAAGCTTCATAAGCTCCTCGGTAACAGATGGTCATTGATAGCGGGGAGACTTCCGGGAAGGACGGCTAACGACGTCAAAAACTACTGGAACTGCCAC CTCAGCAAGCGTCTCCCCTCCGACTCCGACCAGCCACCCCACATCTCCGCCGCTTCTTCCCCGGCCGCCGCCGTAGAGATCATCAGGCCCTACTCGATGA ATATTTCCGCCGCTTCGACAACACAGCTCAGTCCGGCAGGTAGCCAGCATCAGCCGGCGGGTTTCCAAGAAGAGCTGAGCAGCAGCAGTAGCAGCACGTC TCCGGCGCCGCCTACGCCGCCGCCGATGTTATTTGCGGAGGAACAGGAGGTTGTAGACGACATTGGGAATTGCTGCTACCGGATGGAAGAGTTTACTGCG GGGTTCGACGCTGGCGAGGGGATGATAGAGTTTCCAGCAGCGGCCGGATTCGGGTTCGACTGCGACGATGACGGGAGCTACAGCAGCAAATGGGATTGGG ATGAGTTGATTCGCGACATGGATCTTTGGGGCGATCAGTCCTTGTAA
AA sequence Show only first row Show all	>Lus10042522 pacid=23181982 polypeptide=Lus10042522 locus=Lus10042522.g ID=Lus10042522.BGIv1.0 annot-version=v1.0 MGGMAWTEEEDNLLRKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNINRGSFAPEEVDLIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCH LSKRLPSDSDQPPHISAASSPAAAVEIIRPYSMNISAASTTQLSPAGSQHQPAGFQEELSSSSSSTSPAPPTPPPMLFAEEQEVVDDIGNCCYRMEEFTA GFDAGEGMIEFPAAAGFGFDCDDDGSYSSKWDWDELIRDMDLWGDQSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	0	1
					Lus10031737 [exp]	2.0	0.8083
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	3.5	0.8074
					Lus10026869 [exp]	6.7	0.7667
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	10.6	0.7691
AT3G54310			unknown protein		Lus10004782 [exp]	12.3	0.7844
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001033 [exp]	12.6	0.7767
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	17.0	0.7757
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	17.9	0.7277
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10008181 [exp]	20.6	0.7141
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001041 [exp]	22.0	0.7520

Compare expression of checked genes

Lus10042522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.