Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 127 / 6e-37 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT1G06160 107 / 7e-29 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT2G31230 106 / 2e-28 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT5G51190 82 / 4e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23220 77 / 2e-18 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G47230 81 / 3e-18 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT3G23230 77 / 3e-18 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G43410 77 / 4e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G04370 76 / 9e-18 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT4G17490 78 / 2e-17 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022015 [exp] 261 / 2e-89 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10014655 [exp] 150 / 1e-45 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 150 / 2e-45 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10033885 [exp] 118 / 8e-33 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10003562 [exp] 116 / 3e-32 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10027469 [exp] 111 / 1e-30 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10021193 [exp] 111 / 2e-30 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10011829 [exp] 111 / 3e-30 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10022935 [exp] 103 / 8e-27 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G045200 [exp] 136 / 3e-40 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.002G039100 [exp] 130 / 5e-38 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.019G014409 [exp] 124 / 2e-35 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223200 [exp] 123 / 3e-35 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.005G223300 [exp] 120 / 6e-34 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 109 / 1e-29 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.008G166200 [exp] 108 / 1e-29 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.010G072300 [exp] 108 / 3e-29 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.008G166000 [exp] 81 / 9e-20 AT3G23230 94 / 3e-25 Integrase-type DNA-binding superfamily protein (.1) Potri.011G061700 [exp] 82 / 1e-19 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10042557 pacid=23181800 polypeptide=Lus10042557 locus=Lus10042557.g ID=Lus10042557.BGIv1.0 annot-version=v1.0 ATGCTCCTCTTTCGACTCCTCATCAACCACCAATCCGACTCCTCCTCCTCCTCCTCCGCCGAAGAACCATCCTCCTCCTACCCGCAGGATTCGGAAACTA CGGCGGCGTACAGGGGAGTGAGGAAGAGGCCCTGGGGGAAGTACGCGGCGGAGATAAGGGACTCCACCAGGAACGGCGTCCGCGTCTGGCTGGGGACGTT CGATACCGCGGAGGCTGCTGCCTTGGCGTACGATCAGGCGGCGTTTGCGCTCCGTGGTTCCATGGCGGTGCTGAATTTCTCCGCTGAGATAGCCAGGAGG TCTCTCCTGGAGATTGGTTATAAAGGGGGGTGTTACTCTTCGCCGGTGCTGGAGCTGAAGAAGCGGAACTCGGCCATGAGGATGGCGGTGAGAGGGCGGA GGAGTAAGAGGAAAGATAAGGCGGAGGTGGCGGCAGCAGAGGTTGAGGAAGGGACGTCGACGGTGGTGTTTGAGGATTTGGGAGCAGAGTATCTGGAGGA AATTATGGCGATTGCCGAGAATACTAGTATTAGTAATGCTGATGATGATCAGCATTGGTGGTGA
AA sequence Show only first row Show all	>Lus10042557 pacid=23181800 polypeptide=Lus10042557 locus=Lus10042557.g ID=Lus10042557.BGIv1.0 annot-version=v1.0 MLLFRLLINHQSDSSSSSSAEEPSSSYPQDSETTAAYRGVRKRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFALRGSMAVLNFSAEIARR SLLEIGYKGGCYSSPVLELKKRNSAMRMAVRGRRSKRKDKAEVAAAEVEEGTSTVVFEDLGAEYLEEIMAIAENTSISNADDDQHWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10042557 [exp]	0	1
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	4.6	0.9419
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	9.1	0.9405
AT1G74360			Leucine-rich repeat protein ki...		Lus10003477 [exp]	18.1	0.9382
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10027639 [exp]	22.3	0.8992
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	24.2	0.9364
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	34.6	0.9314
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	40.6	0.9106
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Lus10004958 [exp]	44.5	0.9154
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	49.9	0.9295
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	50.9	0.9262

Compare expression of checked genes

Lus10042557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.