Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23250 207 / 4e-67 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 206 / 4e-67 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 203 / 5e-66 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G61250 192 / 4e-61 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT1G79180 187 / 5e-59 MYB ATMYB63 myb domain protein 63 (.1) AT3G02940 186 / 2e-58 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 184 / 2e-57 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G16490 182 / 2e-57 MYB ATMYB58 myb domain protein 58 (.1) AT5G65230 182 / 7e-57 MYB ATMYB53 myb domain protein 53 (.1) AT5G10280 182 / 7e-57 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022021 [exp] 328 / 8e-116 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10021871 [exp] 207 / 6e-68 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10041145 [exp] 205 / 8e-67 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10003557 [exp] 205 / 5e-66 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 203 / 2e-65 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10011820 [exp] 197 / 1e-63 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10021185 [exp] 196 / 5e-63 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10030378 [exp] 186 / 2e-58 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 186 / 2e-58 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018200 [exp] 221 / 2e-73 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 210 / 2e-68 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 207 / 3e-67 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 207 / 3e-67 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.002G157600 [exp] 189 / 7e-60 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G118900 [exp] 186 / 2e-59 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149200 [exp] 186 / 3e-59 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G074500 [exp] 186 / 2e-58 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.014G081200 [exp] 185 / 4e-58 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 185 / 2e-57 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042561 pacid=23181670 polypeptide=Lus10042561 locus=Lus10042561.g ID=Lus10042561.BGIv1.0 annot-version=v1.0 ATGGTGAGAAATCCTAGTTGTGAGAGGATGGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATGAGATTCTCGTCTCCTACATCCGCCGCTACGGCC ACAACAATTGGCGTGCACTCCCCAAACTAGCTGGTTTGTTGAGGTGTGGGAAGAGTTGTAGGTTGCGTTGGATTAATTATTTGCGACCGGACATTAAACG AGGCAATTTCACCGGTGAAGAAGAGGAAATTATTCTAAAGCTTCACCAAATGCTTGGTAACAGGTGGTCAGCAATGGCAGCAAAGTTGCCAGGACGAACC GACAACGAGATAAAGAACTATTGGCATTCTCGCTTGAAGAAAAGATGTCAACACGATCGCCGTAGCTCCAGTTGCAACGATATGACAATCTTGACCTGGA CTGCTTCTTCTTGTTCTTCGTCATTGCAGGGATTGGTGGAACAGAAGAGCAGTACTGGAGATCGGAAAGAGCGTGCACAAGGGTTTGATGATAGTAGTGG TGCAAATGGTGATATGAAGTTCTGGTATGACTTGTTCATGAAAGCACAAGATTCCAAAGTGCAACCTTACAAGGATGAGACTGCCAATCTAGCTATATAG
AA sequence Show only first row Show all	>Lus10042561 pacid=23181670 polypeptide=Lus10042561 locus=Lus10042561.g ID=Lus10042561.BGIv1.0 annot-version=v1.0 MVRNPSCERMGVKKGPWTPEEDEILVSYIRRYGHNNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTGEEEEIILKLHQMLGNRWSAMAAKLPGRT DNEIKNYWHSRLKKRCQHDRRSSSCNDMTILTWTASSCSSSLQGLVEQKSSTGDRKERAQGFDDSSGANGDMKFWYDLFMKAQDSKVQPYKDETANLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	2.6	0.9412
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	5.5	0.9259
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	5.5	0.9463
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	7.2	0.9348
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	10.6	0.9522
AT4G18380			F-box family protein (.1.2)		Lus10040978 [exp]	10.6	0.9409
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	17.4	0.9487
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	25.2	0.9439
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	29.7	0.9373
					Lus10041161 [exp]	30.0	0.9356

Compare expression of checked genes

Lus10042561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.