Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77610 555 / 0 EamA-like transporter family protein (.1) AT1G21870 555 / 0 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 170 / 2e-50 Nucleotide-sugar transporter family protein (.1) AT3G11320 167 / 2e-49 Nucleotide-sugar transporter family protein (.1) AT5G04160 160 / 1e-46 Nucleotide-sugar transporter family protein (.1) AT3G10290 158 / 2e-45 Nucleotide-sugar transporter family protein (.1) AT1G12500 157 / 8e-45 Nucleotide-sugar transporter family protein (.1) AT5G11230 105 / 1e-25 Nucleotide-sugar transporter family protein (.1) AT3G17430 105 / 2e-25 Nucleotide-sugar transporter family protein (.1) AT5G25400 104 / 3e-25 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025645 [exp] 566 / 0 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10029663 [exp] 553 / 0 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10018189 [exp] 416 / 1e-147 AT1G77610 417 / 1e-148 EamA-like transporter family protein (.1) Lus10016446 [exp] 171 / 8e-51 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 167 / 6e-49 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 166 / 7e-49 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 161 / 8e-47 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 145 / 8e-41 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 145 / 1e-40 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G084500 [exp] 574 / 0 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 572 / 0 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.016G043200 [exp] 170 / 2e-50 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 167 / 4e-49 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 166 / 3e-48 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 164 / 6e-48 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 160 / 9e-47 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 158 / 6e-46 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 158 / 3e-45 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 155 / 9e-45 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10042700 pacid=23182008 polypeptide=Lus10042700 locus=Lus10042700.g ID=Lus10042700.BGIv1.0 annot-version=v1.0 ATGGATGACAAGAGTCAGTGGAGCGTCTTCAGATCTTTGCTCGCCATTGTTCAGTGGTGGGGCTTCAACGTTACCGTGATTATCATGAACAAATGGATCT TCCAGAAATTGGACTTCAAGTTCCCACTGTCTGTATCCTGTGTCCACTTCATATGCTCGTCGATTGGAGCTTATATAGCAATCAAGGTGCTGAAGATCAA ACCCCTCATAGTGGTTGACCCTGAGGATCTATGGCGAAGAATATTCCCAATGTCTTTTGTGTTCTGCATAAACATTGTACTGGGCAATGTGAGCTTGCGC TACATTCCAGTTTCGTTTATGCAAACTATTAAGTCATTTACTCCTGCAACAACAGTTATTTTGCAGTGGTTGATTTGGAGGAAATACTTCGACTGGCGCA TTTGGGCTTCATTAGTACCTATCGTTGGAGGAATACTCCTCACGTCCATAACAGAGCTCAGTTTCAATGTGTTTGGGTTTTCTGCTGCCCTGCTTGGCTG TTTGGCAACTTCCACAAAGACTATCCTTGCAGAATCTTTACTGCACGGCTACAAATTTGACAGCATAAATACAGTGTACTACATGGCTCCTTTCGCAACC ATGATCCTGGGAATCCCAGCAATGCTGCTAGAAGGAAATGGGGTTTTGGAATGGTTTCAGACCCACGAGACTGTATACTCTTCACTTGTCATCATTTTAC TCTCTGGGGTGCTAGCCTTCTGTCTAAACTTCTCCATATTTTATGTGATTCATTCAACAACGGCTGTCACGTTCAATGTTGCTGGAAACCTTAAGGTTGC AGTAGCTGTGTTAGTTTCATGGATGATATTCAGGAACCCAATCTCAGCTATGAATGCTGTGGGATGTGCCATCACACTTGTAGGGTGTACATTCTACGGA TACGTAAGACATCTGCTCTCACAACAGCCGCCACCTCCTGGAACTCCTCGAACTCCCCGGACTCCGAGAAGCATGATGGAGTTGCTGCCACTCGTAAATG AGAAATTTGATGATAAGGTTTGA
AA sequence Show only first row Show all	>Lus10042700 pacid=23182008 polypeptide=Lus10042700 locus=Lus10042700.g ID=Lus10042700.BGIv1.0 annot-version=v1.0 MDDKSQWSVFRSLLAIVQWWGFNVTVIIMNKWIFQKLDFKFPLSVSCVHFICSSIGAYIAIKVLKIKPLIVVDPEDLWRRIFPMSFVFCINIVLGNVSLR YIPVSFMQTIKSFTPATTVILQWLIWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFSAALLGCLATSTKTILAESLLHGYKFDSINTVYYMAPFAT MILGIPAMLLEGNGVLEWFQTHETVYSSLVIILLSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWMIFRNPISAMNAVGCAITLVGCTFYG YVRHLLSQQPPPPGTPRTPRTPRSMMELLPLVNEKFDDKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	0	1
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	1.0	0.8959
AT5G47540			Mo25 family protein (.1)		Lus10039045 [exp]	3.0	0.8170
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	6.6	0.8142
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	7.5	0.8063
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	9.8	0.7992
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	11.8	0.7930
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	12.7	0.7978
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	14.9	0.8279
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	15.5	0.7596
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	15.7	0.7851

Compare expression of checked genes

Lus10042700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.