Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 404 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 391 / 1e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 366 / 9e-107 transmembrane receptors;ATP binding (.1.2) AT1G69550 335 / 8e-96 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 333 / 1e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 302 / 6e-85 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 299 / 3e-84 TAO1 target of AVRB operation1 (.1) AT5G41550 295 / 1e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 293 / 7e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16860 294 / 9e-83 RPP5, RPP4 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035674 [exp] 1463 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 1374 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 1283 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017143 [exp] 1229 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029628 [exp] 1085 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004115 [exp] 1066 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10023272 [exp] 1023 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 1016 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 947 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 435 / 3e-135 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 436 / 5e-134 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 436 / 7e-134 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 434 / 2e-133 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 435 / 3e-133 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 434 / 1e-132 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 437 / 2e-132 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002066 [exp] 432 / 2e-132 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 431 / 2e-132 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 426 / 1e-131 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10042714 pacid=23181693 polypeptide=Lus10042714 locus=Lus10042714.g ID=Lus10042714.BGIv1.0 annot-version=v1.0 ATGAGCATGTGGTCCGGTGAAGGAACAACAGTCTCCAATGCTTCTTCAGAATCACAAACATCAGCCGCAGAACCGGAATCTGTCGTCAATATTGCTTTGG AGTACGAGGTTTTCCTGAGCTTTAGAGGGCCTGATGTCCGAAAAAGCTTTGCGGACTTTCTCTACAACTATTTGGTCCGTTCCAAAATCCGCACCTTTAG GGATGAAGAAGAGCTTCGGAAGGGGGACACTATTGCACCTTCTCTTATCCAGGCTATCATGGAGTCGAAGATTTACATCCCAATTTTATCAAAGAGCTAT GCTTCTAGCAAATGGTGCCTCCAAGAACTAGCTAAGATGGTTGAGTGTTGCAGGAAAGGGAAGGGGCACATCATATTGCCCATTTTCTATTTCATGGACC CTAGAGATGTCCGACATCAGGCAGGTCCTTATGAGGATGCATTTGAACAGCATAGTAAGAAACATGACCCTGTAACTGTACAAGAATGGAGGACAGGTCT TCAAGAAGTCGGGCAAATGAAAGGATGGCATGTTACCGAAATAGACGGTAACTCAGGAGTTGGTTGGAACTACACTTTAGTGACTGAGGAGTTGGTTGGC ATTGATTCTCATGTGCAAGAAGTGACGAGATTGTTGAATTTAGACTCTAGAGATGAGAAAATTGTTGGGATTCAAGGCATTGGTGGCATGGGTAAAACTA CCATAGCTAAAGCAGTCTACGACAATATCTGCACAAGCTTCAATCGTTGCTGTTTCTTAGAAAATATACGGGAGCTAATGTCGAAGAATGATGGCATTGT GTCTTTACAGAATAAGCTCATCTCTAGCATTTTGAGGGTTGATTTTCAGGTTAAAGATCCTAGTGAAGGGGTTAAAACGATTAGAGAGAGAATCTGCAAA TATAAGGTCTTGGTTGTTCTGGATGATGTAGATGATACATTTGACTTTGACCAAATACTAGGAACATTAGATCACTTCTCCTCAGAAAGTAGATTCATCA TAACAACAAGAGACAAGAGAGTACTAGAGCTCCTTCAAAAATATAAGTTGTATGAACCTGAGGAAATGAGTTCTGATCATTCTCTTCAACTCTTTAGCCA ACATGCTTTTCGTGTGCATCACCCTCCAGAAGATTATACGACTCTATGTGATGAATTCGTAAAAGTTGCAGGAAGGCTTCCTTTGGCTCTTAAAGTCATA GGGTCGCTCCTGTTTCGTAGAGATAAACAGTTTTGGAAAGAAAAGTTGAGGGAATTGAAAAATGTACCTGCCACTAGCAATAAGGTGCAGCAAAGACTGA AGATTAGCTATAATGAGTTGACCCATAATGAAAAACAGATATTTCTTGACATTGCCTGCTTTTTTGTTGGAGAGGATAGAGAATCACCCGTCCATATGTG GAGTGATTGTAAATTTTATCCAGAAAGTGGGTTAAGGACTCTTGTTCTTAGGTCCTTAATTAAAATCAATGAGAGAAATCAATTCTGGATGCATGATCTT CTTAGAGACCTTGGGAGAGCAATTGTTATTGAGGAAGATGTTGAAAATCCAAGCAAGCGAAGCAGGATTTGGTCTTATGAAGATGCCATGAACATGTTTA TAAATGTAAAGGGAACTGATAAAGTGGAAATGCTCAGGATTGATTTGAGAGATGATAGCAGCCTTATGCTCACAGCGAAAACATTTGAAAAACTGCCAGG GTTAAGGTATCTTGACATGGCACATCTGGAATATTCTCTCACGGGGGACTTCAGTGGAATTCTTCCAGATATACGTTGGCTTAGGCTGCATAGATGTCTA TCACTCCCTACTGATATCAACCTTAAGAAAGTGGTAATTCTTGTTTTACAAAGTTGCGGTGTGACAGATGATTGGAGAGGATGGCTCGGAGTCCAGGTGG CTCACAACCTGAAAGTTATAAATCTAAGTCGCTGCATCGGTCTAAAAAGAGTTCCGAACTTGGCTCAATGTGAGAGCCTAGACTCGATAGATCTCACCGA CTGCTCAGGAATGAGAGGGGAACTCAATATCGGTGGTTTCAGGGATTTAAAAGTAGTAAGGTTCCCAGGGACAGAAATCACTGACTTAACAGGTGACATG GGAAAGCTTGAAAAACTCCAAGAGATAGAAACGTGTAGGTCGGTCTGGAGGGCCCAAGAAATAGTACTCCCCACAGGCATAAAACGGCTGAGCATCTCAT CTCCTAAAGTTTCCAATCTTCTCGAGCTTAAAGACTTGGAGGAGCTATGCTTTATTGAATGTGATGCTGCTCCCGAAATTCCTGGGGGTATATGGCAGCT GACAAAGTTGAAGACTTTAAGGCTTTACAAGTGCAGAAGAAATGGTAGTCTGCTGATGGATGAAGAAGGTACCCTCCCATCGTCTCTAATCTCACTTACC ATTCATGGTCGTTTCTTTTCGTATAGACTACCAAATCTTGGAAATTTGAATAGTTTGACTGAGCTACGATTGACAAATCTCGGGATAACTGAAATTCGAG GTCTGGGAGAGCTAAGAATGCTGGAAGTCCTTGTAATATTATCCTCAGTTTTATACAATCTCCGTGGCCTTGAAAATCTCGTGCGCCTGAAAGAGCTGAC CCTGCAAAATTGTCGTAGACTTGAGAATCTACCGAGTCTATCGACCTTGGTCAAGTTACACAGTCTAGAGATCACTAAGTGTAGGGTTCTCTCTAAGATT CAAGGTTTGAGTGGACTGAGGAGATCATTGTTAAATCTGAAAGTTAGTGAATGTGACAAGCTAGTAAATATTGAAGGCGCTGAATATCTGGAAGCACTGG AAAGTCTGACATGGGAGTCAGATCAATTTCAAGCGCCGGCCCCTGATATTCTAGGTTCGGGTCCACAGAAACAGTTACCGGATCTTTCGCTTCTCCGGGA GCTAAAAGAATTGTGCTTTAAAGGTTGGGTGGAGTTCACCGAAGTCAAAGGTCTCGAAAGATTGACATCGTTAAAATCCCTGGTAATGGGACTTTGCACG TCGCTTAGGAGGTTGCCCGATCTGTCAGGTCTCAAGGACTTGGAGAGGTTGAATGTTAGTAACTGCAGACAATTGGTTGATGTCTCGGGCATCCGAGGAT TGGAATCGTTGATAAAGCTGGACATTTCTGGTTCACCAATTGTGGAGTTGCCTGATATATCTGGGCTGAAGAATTTGAAGCAGTTAGATGTTAGGGGTTG CAGCCTGTTAACTAAGGTCGTCGGTTTAGATAAACTGGAGGAGTTACGAGGGTTGAATATGGGTAATTGTCAGTCGATTAAGAAGTTGCCAGATTTGTCA GGTCTCAAGAACCTGTTGTATTTAAATTTGAAGGGATGCATTCAATTAAAGGATGTGAAAGGACTTGAGAAATTGAAGGACTTAGGGTATGTGGAAATGG AGAAAAGGCTAAAAGTAAAGCATTACTTGAAATCGGCTAGGTTGTATGGTAAGCAATTGGCACGATCTGTTCACGATCGTCTGAAGAATTGA
AA sequence Show only first row Show all	>Lus10042714 pacid=23181693 polypeptide=Lus10042714 locus=Lus10042714.g ID=Lus10042714.BGIv1.0 annot-version=v1.0 MSMWSGEGTTVSNASSESQTSAAEPESVVNIALEYEVFLSFRGPDVRKSFADFLYNYLVRSKIRTFRDEEELRKGDTIAPSLIQAIMESKIYIPILSKSY ASSKWCLQELAKMVECCRKGKGHIILPIFYFMDPRDVRHQAGPYEDAFEQHSKKHDPVTVQEWRTGLQEVGQMKGWHVTEIDGNSGVGWNYTLVTEELVG IDSHVQEVTRLLNLDSRDEKIVGIQGIGGMGKTTIAKAVYDNICTSFNRCCFLENIRELMSKNDGIVSLQNKLISSILRVDFQVKDPSEGVKTIRERICK YKVLVVLDDVDDTFDFDQILGTLDHFSSESRFIITTRDKRVLELLQKYKLYEPEEMSSDHSLQLFSQHAFRVHHPPEDYTTLCDEFVKVAGRLPLALKVI GSLLFRRDKQFWKEKLRELKNVPATSNKVQQRLKISYNELTHNEKQIFLDIACFFVGEDRESPVHMWSDCKFYPESGLRTLVLRSLIKINERNQFWMHDL LRDLGRAIVIEEDVENPSKRSRIWSYEDAMNMFINVKGTDKVEMLRIDLRDDSSLMLTAKTFEKLPGLRYLDMAHLEYSLTGDFSGILPDIRWLRLHRCL SLPTDINLKKVVILVLQSCGVTDDWRGWLGVQVAHNLKVINLSRCIGLKRVPNLAQCESLDSIDLTDCSGMRGELNIGGFRDLKVVRFPGTEITDLTGDM GKLEKLQEIETCRSVWRAQEIVLPTGIKRLSISSPKVSNLLELKDLEELCFIECDAAPEIPGGIWQLTKLKTLRLYKCRRNGSLLMDEEGTLPSSLISLT IHGRFFSYRLPNLGNLNSLTELRLTNLGITEIRGLGELRMLEVLVILSSVLYNLRGLENLVRLKELTLQNCRRLENLPSLSTLVKLHSLEITKCRVLSKI QGLSGLRRSLLNLKVSECDKLVNIEGAEYLEALESLTWESDQFQAPAPDILGSGPQKQLPDLSLLRELKELCFKGWVEFTEVKGLERLTSLKSLVMGLCT SLRRLPDLSGLKDLERLNVSNCRQLVDVSGIRGLESLIKLDISGSPIVELPDISGLKNLKQLDVRGCSLLTKVVGLDKLEELRGLNMGNCQSIKKLPDLS GLKNLLYLNLKGCIQLKDVKGLEKLKDLGYVEMEKRLKVKHYLKSARLYGKQLARSVHDRLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	6.0	0.8230
					Lus10009807 [exp]	6.3	0.7478
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	7.3	0.7528
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	7.4	0.7843
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	7.5	0.7867
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	8.7	0.7850
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	9.9	0.7463
AT5G17680			disease resistance protein (TI...		Lus10029722 [exp]	10.6	0.7189
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	13.0	0.7313
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	13.9	0.7991

Compare expression of checked genes

Lus10042714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.