Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21700 671 / 0 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT4G34430 141 / 2e-34 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT2G33610 97 / 7e-21 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 94 / 9e-20 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT3G07740 57 / 3e-08 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 47 / 5e-05 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT5G17300 42 / 0.001 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029695 [exp] 1211 / 0 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10040472 [exp] 167 / 2e-42 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10023583 [exp] 166 / 5e-42 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 139 / 9e-34 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 138 / 2e-33 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10016043 [exp] 135 / 3e-33 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 136 / 4e-33 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 114 / 2e-26 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 114 / 3e-26 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080600 [exp] 841 / 0 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 831 / 0 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 159 / 4e-40 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 154 / 2e-38 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.015G100400 [exp] 118 / 2e-27 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 81 / 8e-16 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.014G166300 [exp] 54 / 2e-07 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.006G017300 [exp] 53 / 8e-07 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 50 / 5e-06 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.012G038300 [exp] 44 / 0.0003 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042734 pacid=23181828 polypeptide=Lus10042734 locus=Lus10042734.g ID=Lus10042734.BGIv1.0 annot-version=v1.0 ATGCCGGCTTCTCCTTCTTTCCCTTCCTCTGACGGTAGAGGAAAATGGAAGAGGCGGAAGCGCGAATCCCAGATTTCCCGCAGAATCAAGCACGAGGATT CCGACGACGACAACAACGACGACGACGACGAAGGCTCCGAGGACCAACCTAACAGCGCTGCTGCAGCTGGTGGCAACTCTTCTCAGTACGCTGCCTTTCC CGATCCCGTCGAGGTGCTCGCCGACGGAGGGGTCCGCATCTGTGACTTCCCTCCTGTCACTAGGCGCTCTGTGAACCGCCCCCATGCTTCGGTTATGGCG ATTGTGGCTGCCGAGAGGGCGAATTTATATGGGGATGGGATTGGTAGTAGTAGAGGAGGGGTGTTGCCAAGTTTGGAGAATTTGTCGTGTGGGCAGATGG CGGCGTTGTCTGCTGTCCCTGCCGAGGGGGATCAGGAAAGGAACGACGGTGGGAATTCGGCGGCGTCGTTTGTGGTGACGCCTCCTCAGATCATGGAAGG GAGAGGGGTCGTTAAGCGGTTTGGGGATGAAGTTCTCGTGGTTCCTATGCATTCAGATTGGTTTGCACCTGCGACTGTGCATCGACTGGAGAGGCAAGTG GTTCCCCATTTTTTCTCAGGGAAATCAACTGATCATACACCGGAGAAGTATATGGACTGTAGGAATCACATTGTTGCAAAATACATGGAGAATCCCGATA AGCGGGTAACAGTTTCAGATTGTCAAGGATTGGTACCTGGCATTGGCGACGAAGAATTGTCTCGGATTGTTAGGTTTCTGGATCATTGGGGGATTGTTAA TTATTGTGCGACTGCACCCAATCGTGAATCTTGGAATAGTAGTTCCTATTTGAGGGATGACGTTAATGGTGAGGTTCAAGTGCCGTCAGCTGCTTTAAAG TCTATTGACAGTTTAATCAAATTTGACAAGCCTAAGTGTGGGCTTAAGGCGGATGAGATTTATTCATCAATTTCATGTCACCATAATCTCTCCGACCTGG ACAACAGAATTCGTGAGCGATTGTCTGAAAATTGTTGCAATTACTGTGGTCATCCGCTTCTCAACCTCTACTATCAGTCACAAAAAGATGTTGACATCCT ACTATGCTGTGAATGCTTCCATGATGGGAGATTTGTCATTGGTCATTCAAGCTTAGATTTTGTCAAGCTGGATTCAACAAAACATTATGGAGATGGAGAT GCAGAAAGCTGGACTGATCAAGAAACATTCCGCCTGCTTGAGGCAATGGAAATCTATAATGAGAACTGGACTGAAATTGCGGAGCATGTTAACAGCAAGT CAAAAGCACAATGCATCCTACATTTTTTGCGTTTACCGATGGAGGATGGCCGGTTGGAAAATATTGAAGTTCCAATGGTTCCCAACTCAACGAGTGTATC AAATGGAGATGGTGCCAGCGGGCTTCATTCAAGTTCAAATGGTGAGAAAGCTTCAGCTCTGCTCATCTGCCTGGGATTTGAGTACTGTTTCCTAATACTC TTTATCTATGATGTGGGTTTGACCTATGCAGGTTCCTGCTCCCAAGATAATGATTTAGAAATCAGGCTCCCTTTTGAGAACTCTGAGAATCCTGTAATGT CATTGGTTGCATTTCTTGCCTCTGCTATTGGTCCCAGGGTTGCTGCTGCATGTGCACATGCATCTTTGACAGCATTATCTGAAGATAGTAGATTGGAAAG TGGACAAGGCAATGCTCACGGAGAAGCTGCAAATTCAGTTAATCAAAATGAAACAGAGGTCGCGTCATTATCCGCTGAGAAGGTCAAAGCTGCAGCCAGA ACCGGGCTTGCTGCTGCTGCAACAAAGGGTAAGCTCTTTGCAGATCATGAAGAGCGTGAAATTCAGAGACTTTCTGCCATCATCATAAACCATCAGCTGA AAAGGTTAGAGCTAAAGCTGAAGCAGTTTGCAGAAGTCGAAACTCTTCTAATGAGAGAATGTGAACAAGTGGAGAAGATGAGGCAGAGGTTTGCAGCAGA GCGAGCTCGGATTCAGTCTATCAACATGGGATCTGCTATGCCCACTTTGCAAACAACCCAAACTGGTGTCGACCCGTCCATGTCTGCACCTAGCAGTGTC AACAACAGACCCCAAATGATGCACGCCCCTTCATCACAACCGGGCATCTCTGGGTACGGTACCAGTCAGCAAATGCATCCGCACATGCAGTTCATGCAGC GAGGGATGTCTCCCTCGATGTTCCCTATGGGTCCAAGACTGCCCCTTTCGGCTATACAGCCATCATCTTCTGGGCAGTCGAGTGTCATGTTTAATTCATC TGGTAATTAA
AA sequence Show only first row Show all	>Lus10042734 pacid=23181828 polypeptide=Lus10042734 locus=Lus10042734.g ID=Lus10042734.BGIv1.0 annot-version=v1.0 MPASPSFPSSDGRGKWKRRKRESQISRRIKHEDSDDDNNDDDDEGSEDQPNSAAAAGGNSSQYAAFPDPVEVLADGGVRICDFPPVTRRSVNRPHASVMA IVAAERANLYGDGIGSSRGGVLPSLENLSCGQMAALSAVPAEGDQERNDGGNSAASFVVTPPQIMEGRGVVKRFGDEVLVVPMHSDWFAPATVHRLERQV VPHFFSGKSTDHTPEKYMDCRNHIVAKYMENPDKRVTVSDCQGLVPGIGDEELSRIVRFLDHWGIVNYCATAPNRESWNSSSYLRDDVNGEVQVPSAALK SIDSLIKFDKPKCGLKADEIYSSISCHHNLSDLDNRIRERLSENCCNYCGHPLLNLYYQSQKDVDILLCCECFHDGRFVIGHSSLDFVKLDSTKHYGDGD AESWTDQETFRLLEAMEIYNENWTEIAEHVNSKSKAQCILHFLRLPMEDGRLENIEVPMVPNSTSVSNGDGASGLHSSSNGEKASALLICLGFEYCFLIL FIYDVGLTYAGSCSQDNDLEIRLPFENSENPVMSLVAFLASAIGPRVAAACAHASLTALSEDSRLESGQGNAHGEAANSVNQNETEVASLSAEKVKAAAR TGLAAAATKGKLFADHEEREIQRLSAIIINHQLKRLELKLKQFAEVETLLMRECEQVEKMRQRFAAERARIQSINMGSAMPTLQTTQTGVDPSMSAPSSV NNRPQMMHAPSSQPGISGYGTSQQMHPHMQFMQRGMSPSMFPMGPRLPLSAIQPSSSGQSSVMFNSSGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10042734 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	1.0	0.9308
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	3.5	0.8854
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	4.2	0.8948
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	4.6	0.8935
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	5.5	0.9069
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	7.9	0.8646
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	8.7	0.9027
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	10.4	0.9096
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10020214 [exp]	17.3	0.8595
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	20.0	0.8889

Compare expression of checked genes

Lus10042734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.