Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 691 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 659 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 657 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 652 / 0 AAP5 amino acid permease 5 (.1) AT1G58360 553 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 552 / 0 AAP6 amino acid permease 6 (.1) AT1G10010 538 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 432 / 2e-148 AAP7 amino acid permease 7 (.1.2) AT1G48640 152 / 7e-41 Transmembrane amino acid transporter family protein (.1) AT5G40780 152 / 9e-41 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029702 [exp] 928 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 797 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 789 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 778 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 734 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 662 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 631 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 577 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 563 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079500 [exp] 717 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 712 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 711 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 703 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 702 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.002G079400 [exp] 701 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 701 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 699 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 654 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 573 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10042740 pacid=23181766 polypeptide=Lus10042740 locus=Lus10042740.g ID=Lus10042740.BGIv1.0 annot-version=v1.0 ATGGTCGACAACGGCGTCAACAACGGCGACGGGGAACTCCCTTACCCCGGCCAGCACCACGCCCTCGACGTTTCCATGGACGCCCCTTCCTACGTCGTCA ACAAGTGCTTCGACGAGGATGGCCGCCCCAAACGAACTGGAACCGTATGGACAGCAAGTGCCCACATCATTACCGCCGTCATCGGTTCCGGTGTCCTGTC CCTAGCTTGGTCTACCGCTCAGCTTGGTTGGATTGCTGGCCCCACCGTTCTCTTCTTGTTCTCCTTCGTCACTTACTATACCTCCGTCCTCCTCGCTGCT TGTTATCGCTCTGGCGACCCCGATACCGGCAAGCGTAACTACACTTACATGGACGCCGTCAAATCCCTTCTCGGTGATTTCCAGGAGAAGATATGCGGCT ATGTCCAGTACGCCAATCTCTTCGGAACCGCCGTCGGCTACACAATTGCTTCATCCATCAGCATGATGGCAGTGAAGAGGGCGAATTGTTACCATAGGAG CGGAGGGACGGATCCTTGCCGCATGAACGCAAACCCATACATGATTGCCTTCGGAGTGGTTCAGATCCTTTTCTCCCAAATCCCCGATTTCACCCAGCTT TCTTGGCTCTCCATCGTCGCCTCCGTCATGTCTTTCACTTACTCCTCCATCGGATTGGGTCTTGGCGTTGCTAAAGTCATCGAGAACAAGACCGTTAAAG GAACCCTCACCGGAGTCAGCATCAGCGCCGCCGTTTCCCCTACCGACAAGGTCTGGCGTAGTTTCCAGGCCCTCGGCGGCATTGCTTTCGCCTACTCCTT CTCCAACATCCTCATCGAAATTCAGGACACGGTGAAATCCCCGCCGTCAGAATCAAAGACAATGAAGAGAGCATCACTAATCAGCATCTTCGTAACCACC GTCTTCTACATGCTGTGTGGCTGCTTCGGATACGCCGCCTTTGGAGACGATTCCCCTGGCAACCTCCTAACTGGATTCGGCTTCTACAACCCTTACTGGC TTTCCTCCATAACCACAATCGACATAGCCAACGTCGCAATCGTCGTCCACCTGGTCGGGGCGTACCAAGTGTACGTCCAGCCCATCTACGCGTTCGTTGA GAAAATCGCCGTCAACAAGTACCCGGAGAGCTACTTCATCACCAAGGAAATCAGAATCCCGCTTCCCGCCGGCGGAGGCGGGAACCGATACTACGATTTG AATCTGTTTAGGTTTGTGTGGAGGACGGCATTCGTGATCGTTACGACTTTGATTTCGATGCTATTGCCTTTCTTCAACGACATTGTTGGTTTGCTCGGCG CGTTGGGGTTCTGGCCGTTGACTGTTTATTTCCCGGTCGAGATGTACATTGCACAGAAGAAGATTCCGAAGTGGAGCATCAGATGGCTTTCGCTACAGAT TCTTAGCGTAGCTTGTTTGATTATTTCGGTGGCCGCCGCCGCCGGGTCGATAGCCGGGATAATTGTGGATCTCAAGTCGGTGAAGCCATTTGAGACTACT TACTAG
AA sequence Show only first row Show all	>Lus10042740 pacid=23181766 polypeptide=Lus10042740 locus=Lus10042740.g ID=Lus10042740.BGIv1.0 annot-version=v1.0 MVDNGVNNGDGELPYPGQHHALDVSMDAPSYVVNKCFDEDGRPKRTGTVWTASAHIITAVIGSGVLSLAWSTAQLGWIAGPTVLFLFSFVTYYTSVLLAA CYRSGDPDTGKRNYTYMDAVKSLLGDFQEKICGYVQYANLFGTAVGYTIASSISMMAVKRANCYHRSGGTDPCRMNANPYMIAFGVVQILFSQIPDFTQL SWLSIVASVMSFTYSSIGLGLGVAKVIENKTVKGTLTGVSISAAVSPTDKVWRSFQALGGIAFAYSFSNILIEIQDTVKSPPSESKTMKRASLISIFVTT VFYMLCGCFGYAAFGDDSPGNLLTGFGFYNPYWLSSITTIDIANVAIVVHLVGAYQVYVQPIYAFVEKIAVNKYPESYFITKEIRIPLPAGGGGNRYYDL NLFRFVWRTAFVIVTTLISMLLPFFNDIVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSIRWLSLQILSVACLIISVAAAAGSIAGIIVDLKSVKPFETT Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042740 [exp]	0	1
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10009329 [exp]	12.9	0.7523
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10039680 [exp]	40.2	0.7638
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10004582 [exp]	66.2	0.7117
AT2G20820			unknown protein		Lus10038583 [exp]	94.0	0.7555
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	110.6	0.7524
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10017839 [exp]	110.8	0.7640
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	176.9	0.7410
AT1G67410			Exostosin family protein (.1)		Lus10037016 [exp]	196.3	0.7271
AT1G14390			Leucine-rich repeat protein ki...		Lus10013262 [exp]	230.0	0.7288

Compare expression of checked genes

Lus10042740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.