Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 515 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 508 / 2e-179 AAP2 amino acid permease 2 (.1) AT1G44100 507 / 4e-179 AAP5 amino acid permease 5 (.1) AT5G63850 499 / 3e-176 AAP4 amino acid permease 4 (.1) AT5G49630 426 / 3e-147 AAP6 amino acid permease 6 (.1) AT1G58360 421 / 5e-145 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 419 / 1e-144 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 345 / 1e-115 AAP7 amino acid permease 7 (.1.2) AT1G24400 132 / 2e-34 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 132 / 3e-34 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029703 [exp] 681 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10029707 [exp] 527 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 515 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 502 / 9e-177 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 497 / 8e-175 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 479 / 2e-168 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 476 / 6e-167 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10042744 [exp] 443 / 6e-155 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 426 / 4e-147 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181600 [exp] 524 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 521 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 512 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 513 / 1e-179 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 508 / 2e-179 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 508 / 3e-179 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079700 [exp] 506 / 8e-179 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 504 / 1e-177 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 490 / 4e-172 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 439 / 4e-152 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10042741 pacid=23181694 polypeptide=Lus10042741 locus=Lus10042741.g ID=Lus10042741.BGIv1.0 annot-version=v1.0 ATGATGGCTGCTGCAGAAGAATACGGCTACCCGGATGTCCATTCCCTCGACCTGGCCAAGGAATCACTCGACGACGATGGTCGTCCAAGGCGGACTGGGA GTGTGTGGACGGCGAGCGCACACATAATAACGTCGGTGATCGGGTCGGGAGTGCTGTCGTTGGCATGGGCGATGGCTCAACTCGGGTGGATAGCTGGTCC GGTGGCTATGATTCTGTTTTCGTTTGTGACTTATTATACTTCGACTCTGTTGGCTTCCTGTTACCGTACTGGAGATCCTGTCTCTGGAAAGAGGAATTAC ACTTACATGGATGCTGTCAAATCAAACCTTGGTGGGTCTACGGTGAAAATTTGCGGATATGTTCAGTATGTCAATCTGTTTGGAATTGCGATTGGGTACA CTATAGCATCAACCATTAGCATGATGGCAGTGAAGAGGTCGAACTGTCACCACAAAAATGGAGATACAGAATCAAGGTGCGAGGTGAATGCCAATCCATT CATGATCGGATTCGGAATCGTGGAGATCTTTCTCTCTCAAATCCCCGACTTCGATCAGCTATGGTGGCTCTCCATCGTGGCCGCGGTCATGTCCTTCACT TACTCCGGCATCGGACTAGGCCTCGCCATCGCCAAAGTTGCCGAAAACAGAGAAATCAAGGGAACTTCGACCGGAGTCACCGTCGGAGCCATAACGGAGA TGCAGAAACTGTGGAGGTCGTTCCAGGCACTCGGTAACATTGCTTTTGCATATGCTTACTCCATCATCCTCATCGAAATCCAGGACACGGTGAAATGTCC CCCTTCAGAGGTCAAGACAATGAAGAAAGCAACAGCCATAAGCGTAACAATCACAAGCATTTTCTACATTCTCTGCGGCAGCTTCGGCTACGCAGCGTTC GGAGACTTAGCTCCAGGAAACCTCCTGACCGGAAAGGGCTTCTACGAGCCGTACTGGCTAGTAGACATCGCCAACGTAGCCGTCCTAGTCCATCTGGTAG GTGCATACCAGGTATTCGCCCAGCCGATTTTTCGCCTTCGTGGAGAAACACGCCTCCGCAAGGTACCCGCACAGCCAGTTTATCACCAAGGAGATCAGAG TCTCCTCCAAGTACAGCCTGAACCTCTTCAGGCTGACCTGGAGGACTTCGTTCGTGATCCTGACGACTCTGATATCGATGATCCTGCCGTTCTTTAA
AA sequence Show only first row Show all	>Lus10042741 pacid=23181694 polypeptide=Lus10042741 locus=Lus10042741.g ID=Lus10042741.BGIv1.0 annot-version=v1.0 MMAAAEEYGYPDVHSLDLAKESLDDDGRPRRTGSVWTASAHIITSVIGSGVLSLAWAMAQLGWIAGPVAMILFSFVTYYTSTLLASCYRTGDPVSGKRNY TYMDAVKSNLGGSTVKICGYVQYVNLFGIAIGYTIASTISMMAVKRSNCHHKNGDTESRCEVNANPFMIGFGIVEIFLSQIPDFDQLWWLSIVAAVMSFT YSGIGLGLAIAKVAENREIKGTSTGVTVGAITEMQKLWRSFQALGNIAFAYAYSIILIEIQDTVKCPPSEVKTMKKATAISVTITSIFYILCGSFGYAAF GDLAPGNLLTGKGFYEPYWLVDIANVAVLVHLVGAYQVFAQPIFRLRGETRLRKVPAQPVYHQGDQSLLQVQPEPLQADLEDFVRDPDDSDIDDPAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	0	1
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	1.4	0.8932
AT3G02125			unknown protein		Lus10013196 [exp]	3.5	0.8902
					Lus10005955 [exp]	4.9	0.8767
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	8.8	0.7320
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	9.0	0.8519
AT3G07840			Pectin lyase-like superfamily ...		Lus10043087 [exp]	9.5	0.8402
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	9.5	0.8592
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	10.5	0.8432
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	12.0	0.8640
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	14.1	0.8793

Compare expression of checked genes

Lus10042741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.