Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 668 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G44100 634 / 0 AAP5 amino acid permease 5 (.1) AT5G09220 628 / 0 AAP2 amino acid permease 2 (.1) AT5G63850 627 / 0 AAP4 amino acid permease 4 (.1) AT1G58360 510 / 4e-180 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 505 / 5e-178 AAP6 amino acid permease 6 (.1) AT1G10010 490 / 2e-172 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 364 / 8e-123 AAP7 amino acid permease 7 (.1.2) AT5G40780 122 / 9e-31 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 121 / 3e-30 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 832 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 651 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 649 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 644 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 640 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 637 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 621 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10028546 [exp] 583 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10028236 [exp] 504 / 7e-178 AT5G49630 687 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079500 [exp] 691 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 687 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 675 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 666 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 662 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.005G181600 [exp] 659 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.007G100100 [exp] 649 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 649 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 627 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 522 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10042744 pacid=23181869 polypeptide=Lus10042744 locus=Lus10042744.g ID=Lus10042744.BGIv1.0 annot-version=v1.0 ATGTTCCTCTTCTCCTTCGTCACTTACTACACTTCCACTCTCCTCGCTTCCTGCTACCGCTCCGGTGACCCTCTCTCCGGCAAGAGGAACTATACTTACA TGGACGCCGTCAAATCCAATCTCGGTGGTTCCATGGTCAAGTTTTGCGGGACTGTCCAGTACGTGAATCTCTTCGGCGTCGCCATCGGCTACACTATCGC TTCTTCCATCAGCATGATGGCGGTGAAGAGATCAAACTGTTTCCATGCGAGCGGAGGGAAAGACCCGTGCCACATGAATGCAAACCCATACATGATCGCT TTCGGAATAGTAGAAGTTATCTTCTCCCAAATCCCGGATTTCGATCAGCTCTGGTGGCTATCTATCCTCGCCGCAGTCATGTCCTTCACGTACTCCACCA TTGGACTTGGACTCGGTATTGCACAAGTAGTCGCAAATGGACATGTTATGGGCAGCCTAACCGGCATCAGCATTGGTCCACAAGTCACCCAGACTCAAAA GATATGGAAGAGTTTCCAGGCACTAGGCGACATCGCTTTCGCCTATTCTTACTCCCTAATCCTCATCGAAATCCAGGACACGTTAAAATCCCCACCGTCG GAATCCAAGACGATGAAGAAGGCAAGCCTAGTGAGTGTCTCGGTAACGACACTTTTCTACATGCTATGCGGATGCTTCGGCTACGCAGCCTTCGGAGACC AATCCCCCGGAAACCTCCTGACAGGATTCGGATTCTACAACCCTTATTGGCTGCTCGACATAGCCAACGTAGCCATCGTTATCCACCTCGTGGGCGCTTA CCAAGTGTACTGCCAGCCTCTCTTTGCGTTCGTCGAAAAGCAAGCTGTCAGGAGATTCCCCGACAGCTACTTTATCAACCATGATATCCGAATCACTTTG CTCCCAGGCCGCCATTACAACCTGAATTTGTTCAGGATGGTGTGGAGGACGATTTTCGTGATGCTGACCACCCTCATTTCGATGCTCCTCCCGTTCTTCA ACGGCATCGTGGGTCTCCTTGGGGCATTAGGATTCTGGCCGCTGACGGTTTATTTGCCGATTGAGATGTACGTTGTCCAGAAGAAGATTCCGAAATGGAG CACCAGATGGCTCTGCCTTCAGATACTGAGCGCTGCGTGCCTGATTATCACCGTGGCTGCTGCGACCGGTTCGATCGCTGGAGTTCTTCATGATCTGAAA TCTGCCAAGCCTTTTCATACTACTTATTGA
AA sequence Show only first row Show all	>Lus10042744 pacid=23181869 polypeptide=Lus10042744 locus=Lus10042744.g ID=Lus10042744.BGIv1.0 annot-version=v1.0 MFLFSFVTYYTSTLLASCYRSGDPLSGKRNYTYMDAVKSNLGGSMVKFCGTVQYVNLFGVAIGYTIASSISMMAVKRSNCFHASGGKDPCHMNANPYMIA FGIVEVIFSQIPDFDQLWWLSILAAVMSFTYSTIGLGLGIAQVVANGHVMGSLTGISIGPQVTQTQKIWKSFQALGDIAFAYSYSLILIEIQDTLKSPPS ESKTMKKASLVSVSVTTLFYMLCGCFGYAAFGDQSPGNLLTGFGFYNPYWLLDIANVAIVIHLVGAYQVYCQPLFAFVEKQAVRRFPDSYFINHDIRITL LPGRHYNLNLFRMVWRTIFVMLTTLISMLLPFFNGIVGLLGALGFWPLTVYLPIEMYVVQKKIPKWSTRWLCLQILSAACLIITVAAATGSIAGVLHDLK SAKPFHTTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	1.0	0.9861
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	2.4	0.8684
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	5.2	0.8536
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	6.5	0.8436
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	7.9	0.8346
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	9.2	0.8488
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	9.2	0.8497
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10041715 [exp]	9.5	0.8108
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	9.6	0.7830
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	10.8	0.8498

Compare expression of checked genes

Lus10042744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.