Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21450 682 / 0 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 421 / 2e-142 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 397 / 1e-131 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 382 / 2e-128 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 364 / 8e-120 GRAS SCL13 SCARECROW-like 13 (.1) AT5G52510 251 / 3e-75 GRAS SCL8 SCARECROW-like 8 (.1) AT3G03450 227 / 4e-67 GRAS RGL2 RGA-like 2 (.1) AT1G66350 223 / 6e-66 GRAS RGL1 RGA-like 1 (.1) AT1G07530 225 / 2e-64 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G17490 214 / 2e-62 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029747 [exp] 1150 / 0 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10016596 [exp] 419 / 4e-141 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 417 / 1e-140 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 403 / 3e-135 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 399 / 1e-132 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 381 / 2e-126 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 379 / 3e-125 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 374 / 2e-123 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10003772 [exp] 313 / 3e-103 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G073400 [exp] 828 / 0 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 813 / 0 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 428 / 1e-144 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 421 / 1e-141 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 406 / 2e-135 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 394 / 7e-131 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.016G009700 [exp] 379 / 2e-125 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 370 / 9e-122 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.017G142400 [exp] 276 / 3e-84 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.004G078800 [exp] 260 / 3e-78 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10042776 pacid=23181879 polypeptide=Lus10042776 locus=Lus10042776.g ID=Lus10042776.BGIv1.0 annot-version=v1.0 ATGTCTCTGGTAAATCCAACTTCAGCTGCTCCTTATGGAAATCATAAGCTGTATCCCCTCAAGGGAAGCACCGAGAAGTCTGGTTTATCGGCGCAAATGT TTGGCCCCGACAGAAATGCAACCATTTACACCTCTGATTCTTGCTCCAGCGAGAGTTACGAGAAGTACTTCTTGGACTCACCTTCAGGAGAAGTTATCCA GCCGTCTGTTTCTGGAAATTCTGGGGATTCTTCTTATCAACTGAGAACTGGTTCTGGTTTCGGTTCTTCGATAGCTGCTGAAGTTCCATACAATGCTTAT GTAGTCAATTCTTCTAAACCTGATTTCCTGGATGTTGCTCCAAGTCCTGATACAGAAGCATATGATGAAACCGAGCTTAATATAAAGCTTCAGGAGCTGG AAAGAGCATTGCTTGACGATGATGGACAAGACGATGAAGCTTATATAAACAACCAAAGCATGGAGATTGAAAGTGAATGGTCTGATCAAATGCAGAATCC AATGCTTTATGATTCACCCAAGGAATCGTCATCCATGGATTCTAATCTTAGTAGCATTGGCAGTTGTAAAGAAGTGTGTCAGCTATCTCCAAGGACACCG AAACGACTGCTCTTCGAATGTGCCAATGCAATTTCAGTAGGGAACATTCAGGGAGCTTCAGCTATAATAACCGAGCTCCGACAGATGGGCTCGATCCAAG GAGATCCCGCATCTCGAATCGCAGCATATATGGTCGAAGGTCTTGCAGCCAAAATTGCTTCCTCTGGTAAATACCTTTACAAAGCTCTGAAATGCAAAGA GCCGCCTTCTTCTGATAGGCTTGCTGCCATGCAGATCCTCTTTGAGATTTGCCCTTGTTTTAAGTTCGGGTTTATGGCTGCAAATGGTGCGATGATCGAT GCTTTCAAAGGTGAAAAGAAAGTTCATATTATCGACTTCGATATCAACCAAGGCAATCAGTACATTACACTGATACAAACACTTGCAAACCAGGGAGGTA AGCTGCCATATATACGGTTGACAGGTGTTGACGATCCGGAATCTGTTCAACGACCGATCGGTGGCCTTTCCATAATTGGCCTTAGGCTCGAGAAGCTTGC AGAAGCACTTAAGGTGCCGTTTGAATTTCGTGCTGTGGCATCCAAGACAGCACTTGTTAGCCCATCGATGTTGGAATGTAGACCCGGGGAAGCACTCGTT GTAAATTTCGCCTTCCAGCTTCACCATATACCCGATGAGAGCGTGTCTACGGTGAACGAGAGAGACCAGCTTCTCCGTACCGTTAAGAGCATGAATCCAA AGCTTGTGACTCTCGTGGAACAAGATGTGAATACAAACACGACTCCTTTCGTTCAGAGGTTTGTTAACGCTTATGACTACTATTCCGCTGTGTACGAGTC GCTCGATGTGACTTTGCCAAGGGAAAGCCAGGACCGGATCAATGTCGAGAGGCAGTGTCTGGCGAGGGACATAGTTAACATCGTCTCGTGCGAGGGAGAG GAGAGGATCGAGCGGTACGAGGTTGCTGGGAAATGGAGAGCCAGAATGATGATGGCTGGTTTCAAGCCGCGGGGTATGGGTCCAAATGTGGTGGAGATGA TAAGGAAAGTCATAAAGGAGTATGGTGTGAGGTTTACCTTGAAAGAGGAGATGGGTGCTCTCCAGTTTGGTTGGGAAGAGAGAAGCTTGATTGTTGCTTC AGCATGGAGGTGA
AA sequence Show only first row Show all	>Lus10042776 pacid=23181879 polypeptide=Lus10042776 locus=Lus10042776.g ID=Lus10042776.BGIv1.0 annot-version=v1.0 MSLVNPTSAAPYGNHKLYPLKGSTEKSGLSAQMFGPDRNATIYTSDSCSSESYEKYFLDSPSGEVIQPSVSGNSGDSSYQLRTGSGFGSSIAAEVPYNAY VVNSSKPDFLDVAPSPDTEAYDETELNIKLQELERALLDDDGQDDEAYINNQSMEIESEWSDQMQNPMLYDSPKESSSMDSNLSSIGSCKEVCQLSPRTP KRLLFECANAISVGNIQGASAIITELRQMGSIQGDPASRIAAYMVEGLAAKIASSGKYLYKALKCKEPPSSDRLAAMQILFEICPCFKFGFMAANGAMID AFKGEKKVHIIDFDINQGNQYITLIQTLANQGGKLPYIRLTGVDDPESVQRPIGGLSIIGLRLEKLAEALKVPFEFRAVASKTALVSPSMLECRPGEALV VNFAFQLHHIPDESVSTVNERDQLLRTVKSMNPKLVTLVEQDVNTNTTPFVQRFVNAYDYYSAVYESLDVTLPRESQDRINVERQCLARDIVNIVSCEGE ERIERYEVAGKWRARMMMAGFKPRGMGPNVVEMIRKVIKEYGVRFTLKEEMGALQFGWEERSLIVASAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10015238 [exp]	1.7	0.8718
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	5.3	0.8508
					Lus10039778 [exp]	5.5	0.8545
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	5.7	0.8729
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10023292 [exp]	7.3	0.8461
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	8.7	0.8746
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	8.7	0.8684
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	8.9	0.8446
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	8.9	0.8468
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	9.4	0.8440

Compare expression of checked genes

Lus10042776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.